Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G215100.1 | Wheat | nucleus | 94.55 | 94.2 |
| TraesCS4D01G097600.1 | Wheat | nucleus | 93.09 | 93.09 |
| HORVU4Hr1G043740.1 | Barley | nucleus | 90.91 | 90.25 |
| EES09471 | Sorghum | nucleus, plastid | 60.36 | 53.55 |
| Os11t0195800-01 | Rice | nucleus | 56.36 | 53.08 |
| Zm00001d007308_P001 | Maize | cytosol, plastid | 34.18 | 47.24 |
| GSMUA_Achr2P20680_001 | Banana | nucleus | 32.0 | 40.55 |
| VIT_12s0035g00790.t01 | Wine grape | nucleus | 28.73 | 37.8 |
| KRH26326 | Soybean | cytosol | 29.09 | 34.63 |
| Solyc01g103700.2.1 | Tomato | nucleus | 27.64 | 34.08 |
| Zm00001d053139_P001 | Maize | plastid | 37.09 | 33.77 |
| TraesCS5B01G116200.1 | Wheat | plastid | 34.55 | 31.15 |
| PGSC0003DMT400064073 | Potato | nucleus | 27.27 | 31.12 |
| Bra027888.1-P | Field mustard | nucleus | 25.09 | 28.87 |
| AT1G58070.1 | Thale cress | nucleus | 25.82 | 25.0 |
| CDY68194 | Canola | cytoskeleton, cytosol, nucleus | 18.18 | 23.26 |
| CDX91607 | Canola | cytoskeleton, cytosol, nucleus | 18.18 | 23.26 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G101000.1 | EnsemblPlantsGene:TraesCS4B01G101000 | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF11 | SEG:seg |
| MapMan:20.2.3.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:106820181..106821008
Molecular Weight (calculated)
29224.2 Da
IEP (calculated)
5.926
GRAVY (calculated)
-0.319
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDRVEVDT ARPFRSVKEA VAVFGEHILV GGSNSRYSSS AVAIADPHAN ATPNAKHEDC SRSSTATLSP DAMAEVDAEP VHEATAAIVP MYSAHSSPSF
101: TSPRSAYGDD GELGCQDDEA GLAVVSSIKK LEAEVADTRR EVLQLRKRGT EMEMAVASLN AQLHRGLSRL AEIEADKAAA AARCSIRGDA DVMAAAMVRS
201: ERWAEKSSTY SSEYLPSFSH ALSLGEIDDD LLGGRRRKAQ KVKPIVPLIG DILFSKSFSK RKSGKDSGDL SGVLG
101: TSPRSAYGDD GELGCQDDEA GLAVVSSIKK LEAEVADTRR EVLQLRKRGT EMEMAVASLN AQLHRGLSRL AEIEADKAAA AARCSIRGDA DVMAAAMVRS
201: ERWAEKSSTY SSEYLPSFSH ALSLGEIDDD LLGGRRRKAQ KVKPIVPLIG DILFSKSFSK RKSGKDSGDL SGVLG
001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
Arabidopsis Description
At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.