Factsheet for GSMUA_Achr2P20680_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P05880_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	GSMUA_Achr3P05880_001	AT1G54060.1	21798944
AT1G58070.1	GSMUA_Achr8P23650_001	AT1G54060.1	21798944
AT1G58070.1	GSMUA_Achr9P14340_001	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00790.t01	Wine grape	nucleus	37.79	39.23
Solyc01g103700.2.1	Tomato	nucleus	36.87	35.87
PGSC0003DMT400064073	Potato	nucleus	37.33	33.61
KRH26326	Soybean	cytosol	35.02	32.9
HORVU4Hr1G043740.1	Barley	nucleus	41.94	32.85
TraesCS4B01G101000.1	Wheat	nucleus	40.55	32.0
TraesCS4A01G215100.1	Wheat	nucleus	40.09	31.52
TraesCS4D01G097600.1	Wheat	nucleus	39.63	31.27
Os11t0195800-01	Rice	nucleus	40.09	29.79
EES09471	Sorghum	nucleus, plastid	41.47	29.03
Bra027888.1-P	Field mustard	nucleus	31.8	28.87
AT1G58070.1	Thale cress	nucleus	33.18	25.35
CDY68194	Canola	cytoskeleton, cytosol, nucleus	23.96	24.19
CDX91607	Canola	cytoskeleton, cytosol, nucleus	23.96	24.19
Zm00001d007308_P001	Maize	cytosol, plastid	22.12	24.12
EES16770	Sorghum	nucleus	31.34	22.22
Zm00001d053139_P001	Maize	plastid	30.41	21.85
TraesCS5B01G116200.1	Wheat	plastid	29.95	21.31
TraesCS5A01G119700.1	Wheat	plastid	29.95	21.31
HORVU5Hr1G038070.1	Barley	nucleus	29.95	21.04
Os12t0182100-00	Rice	cytosol, plastid	29.49	19.45

Protein Annotations

EnsemblPlants:GSMUA_Achr2P20680_001	EnsemblPlants:GSMUA_Achr2T20680_001	EnsemblPlantsGene:GSMUA_Achr2G20680_001	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF11
SEG:seg	UniParc:UPI00029664A6	UniProt:M0S9Q9	MapMan:20.2.3.3	:	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G20680_001]

Coordinates

chr2:-:20455893..20456546

Molecular Weight (calculated)

24016.6 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.535

Length

217 amino acids

Sequence
(BLAST)

001: MEGQLSSPPP SVIVSDRAEV DTSRPFRSVK EAVAVFGDRF LAGNGRSQKN TWSRPVISVP PPKQPSSASS SPPSYSSSAS HFIQENEEEL VILSSLRKLE
101: AELKEAKREL VLLKGRESET EIVVASLSAQ LSESMSKLAE MEAAMEDEAQ PCRVRSERWQ EERMEDFKAS LEYLPTLAQA FGLAGLEEGF GGRRKREVPK
201: KKPIIPLIPD IFSKKKG

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.