CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94630
EER95642
EER99221
EES11282
EES12241
KXG30464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58070.1	EES12241	AT1G54060.1	21798944
AT1G58070.1	KXG30464	AT1G54060.1	21798944
AT1G58070.1	EER94630	AT1G63120.1	21798944
AT1G58070.1	EER95642	AT1G63120.1	21798944
AT1G58070.1	EER99221	AT1G63120.1	21798944
AT1G58070.1	EES11282	AT1G63120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G119700.1	Wheat	plastid	54.25	54.43
TraesCS5B01G116200.1	Wheat	plastid	53.27	53.44
HORVU5Hr1G038070.1	Barley	nucleus	52.29	51.78
Os12t0182100-00	Rice	cytosol, plastid	42.48	39.51
VIT_12s0035g00790.t01	Wine grape	nucleus	23.2	33.97
EES09471	Sorghum	nucleus, plastid	33.99	33.55
Solyc01g103700.2.1	Tomato	nucleus	23.2	31.84
GSMUA_Achr2P20680_001	Banana	nucleus	22.22	31.34
PGSC0003DMT400064073	Potato	nucleus	24.51	31.12
KRH26326	Soybean	cytosol	22.88	30.3
Bra027888.1-P	Field mustard	nucleus	22.22	28.45
CDX91607	Canola	cytoskeleton, cytosol, nucleus	18.3	26.05
CDY68194	Canola	cytoskeleton, cytosol, nucleus	18.3	26.05
AT1G58070.1	Thale cress	nucleus	20.91	22.54

Protein Annotations

MapMan:20.2.3.3	EntrezGene:8054102	UniProt:C5YT59	ncoils:Coil	EnsemblPlants:EES16770	ProteinID:EES16770
ProteinID:EES16770.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	PANTHER:PTHR32054
PANTHER:PTHR32054:SF11	EnsemblPlantsGene:SORBI_3008G059800	UniParc:UPI0001A88020	RefSeq:XP_002442932.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:6380782..6381972

Molecular Weight (calculated)

33394.2 Da

IEP (calculated)

10.514

GRAVY (calculated)

-0.471

Length

306 amino acids

Sequence
(BLAST)

001: MASDRGEVDT SRAFRSVKEA VAVFGERILV REAQFRPNGG AHGGRRVGKE VNSRVNAVAI AASDVKPPDR SDGVMESHSK PSVVTYNAKK ELTSGNTKPA
101: VPRPPVAEDV PMYLVPTSPP FFASSPSLAN DDDEEQERKA ADLMVMSSIK NLEDEAARTR QEVSQLKRRL AEMELSMATL NAKLHRALSK VAHMEADNAA
201: AARASIERAG RGGGDMALTV WAEHRAPSRP QLGHLLRLGE ADREAMVVSG GGREVAAPAR RKVQKQKPIV PLVVPLINGV IFSKKRRMKD KESVYMKELY
301: SLLRLS

Best Arabidopsis Sequence Match ( AT1G58070.1 )
(BLAST)

001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF

Arabidopsis Description

At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.