Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16770 | Sorghum | nucleus | 39.51 | 42.48 |
| TraesCS5A01G119700.1 | Wheat | plastid | 33.74 | 36.39 |
| TraesCS5B01G116200.1 | Wheat | plastid | 32.83 | 35.41 |
| HORVU5Hr1G038070.1 | Barley | nucleus | 32.83 | 34.95 |
| Os11t0195800-01 | Rice | nucleus | 27.36 | 30.82 |
| GSMUA_Achr2P20680_001 | Banana | nucleus | 19.45 | 29.49 |
| VIT_12s0035g00790.t01 | Wine grape | nucleus | 17.63 | 27.75 |
| Solyc01g103700.2.1 | Tomato | nucleus | 18.54 | 27.35 |
| PGSC0003DMT400064073 | Potato | nucleus | 19.76 | 26.97 |
| KRH26326 | Soybean | cytosol | 18.24 | 25.97 |
| Bra027888.1-P | Field mustard | nucleus | 17.63 | 24.27 |
| CDX91607 | Canola | cytoskeleton, cytosol, nucleus | 14.59 | 22.33 |
| CDY68194 | Canola | cytoskeleton, cytosol, nucleus | 14.59 | 22.33 |
| AT1G58070.1 | Thale cress | nucleus | 17.33 | 20.07 |
Protein Annotations
| EnsemblPlants:Os12t0182100-00 | EnsemblPlantsGene:Os12g0182100 | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF11 | ProteinID:BAT16155.1 |
| SEG:seg | UniParc:UPI000393AD4D | UniProt:A0A0P0Y7M9 | MapMan:20.2.3.3 | : | : |
Description
Hypothetical conserved gene. (Os12t0182100-00)
Coordinates
chr12:-:4170330..4171500
Molecular Weight (calculated)
34584.7 Da
IEP (calculated)
7.349
GRAVY (calculated)
-0.388
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MISPLCIYIS PRLYVHCCLE RSHPTLHGGA MAATAASPER ARAEVDTSSA FRSVKEAVAV FGERILVGEN RNGGGGYGGG DRRAGREGRT RSNTLAIAAS
101: FAKLEGGGGG DGVRVSNHSK PNAIGVNAKL PVASDATPPA MYLVPSSSPP FFASSPSLAN DDDGVSAASA SDAMVMGSIR KVEEEAARAR QEVVQLKRRL
201: AETELAMATL SAKLHRALSK LAHMEADRAA AERARIQRRD GRDMALAVWA ASGGGDRRRG VATAAAHAAA TARRQPLGEL LRLGEADEGA EGEADRATDR
301: SSHQWHPLLQ EEEEQGQGEL VHEGALQLA
101: FAKLEGGGGG DGVRVSNHSK PNAIGVNAKL PVASDATPPA MYLVPSSSPP FFASSPSLAN DDDGVSAASA SDAMVMGSIR KVEEEAARAR QEVVQLKRRL
201: AETELAMATL SAKLHRALSK LAHMEADRAA AERARIQRRD GRDMALAVWA ASGGGDRRRG VATAAAHAAA TARRQPLGEL LRLGEADEGA EGEADRATDR
301: SSHQWHPLLQ EEEEQGQGEL VHEGALQLA
001: MDIEEMEGNN QVEEHHVDTS RPFSSVKEAV AIFGQRIMLP VQTHTMNSKS ASPIAASRSI NQNAKPRSPG LSQTVKLVIP TASPSISQTA KLVSPIASPS
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
101: ISQTASSSSS PWKQRSLLPP SPQGPKEEIM DVLKKLEAEI TETKTEVKML KERESETEVA LATLNAELHK NKSKIAKAEA DAAGKSAAAM TKSVSFKDTK
201: EKENGEDQRR KELMRKMQKE YPSLAQILDS NKGNRDGYFA NTKKTKKKKK PIIPLVGDFF FFKKKGSSPE ISGPLYTTSS TLHF
Arabidopsis Description
At1g58070 [Source:UniProtKB/TrEMBL;Acc:Q9C6F8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.