Factsheet for VIT_09s0002g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 6
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72924	Canola	mitochondrion	51.89	60.11
Bra016051.1-P	Field mustard	mitochondrion	50.47	58.47
Bra003876.1-P	Field mustard	mitochondrion	52.36	58.42
AT1G72530.2	Thale cress	mitochondrion	52.36	57.81
CDX68262	Canola	mitochondrion	51.42	57.37
CDY65020	Canola	mitochondrion	50.94	56.84
CDX96416	Canola	mitochondrion	50.0	55.79
VIT_05s0049g01500.t01	Wine grape	plastid	29.72	27.04
VIT_05s0077g01880.t01	Wine grape	mitochondrion	32.55	26.54
VIT_07s0005g03930.t01	Wine grape	mitochondrion, plastid	29.25	26.27
VIT_19s0014g04710.t01	Wine grape	plastid	25.94	24.02
VIT_19s0014g01550.t01	Wine grape	plastid	42.92	21.62
VIT_12s0035g00240.t01	Wine grape	mitochondrion	25.47	13.4

Protein Annotations

EntrezGene:100242867	wikigene:100242867	MapMan:16.12.5.1	EMBL:AM488980	ProteinID:CAN77774	ProteinID:CAN77774.1
ProteinID:CBI35859	ProteinID:CBI35859.3	UniProt:D7TZR3	EMBL:FN596494	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016554	EntrezGene:LOC100242867	wikigene:LOC100242867	PANTHER:PTHR31346
PANTHER:PTHR31346:SF6	UniParc:UPI00015C8476	ArrayExpress:VIT_09s0002g01100	EnsemblPlantsGene:VIT_09s0002g01100	EnsemblPlants:VIT_09s0002g01100.t01	RefSeq:XP_002272872
RefSeq:XP_002272872.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:+:841081..844315

Molecular Weight (calculated)

24256.8 Da

IEP (calculated)

9.393

GRAVY (calculated)

-0.518

Length

212 amino acids

Sequence
(BLAST)

001: MIRSLIRNPL QLTAVLSLSA AASNVRLSRC YFPLIPTSSF VSSRSAFGYF SSDSETQSSE LTRLPTILDG CDYEHWLVVM EAPQRYPLRD EIVRGYIRTL
101: AMVLRSEEEA KKSIYSVSTK YYYAFGCKIA ENLAHQIKSL PNVKWVLPDS YLCHGGNGYG GEPFVNGEVV PYDEKYHADW LRDKSDDKCR NKTSSKKARR
201: KRKNRFSKDQ DV

Best Arabidopsis Sequence Match ( AT1G72530.1 )
(BLAST)

001: MARIIRRPLN LTAAVRFRLS PLSPFSGNSG SINSETTSWS ELIRVPSLVE GCDYKHWLVL MKPPNGYPTR NHIVQSFVET LAMALGSEEE AKRSIYSVST
101: KYYYAFGCRI HEPLTYKIRS LPDVKWVLPD SFIVDGDNRY GGEPFVDGEV VPYDEKYHAD WLRDQTDEDA KSGVVKKKHR RKRKKKLI

Arabidopsis Description

Plastid developmental protein DAG [Source:UniProtKB/TrEMBL;Acc:F4IDD2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.