Factsheet for Bra037473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86291	Canola	cytosol	100.0	82.94
CDX85352	Canola	cytosol	98.09	81.35
AT5G48640.1	Thale cress	cytosol	93.3	77.08
Bra020685.1-P	Field mustard	cytosol	69.86	74.87
KRG99632	Soybean	cytosol	75.12	62.06
KRH46635	Soybean	cytosol	74.16	61.26
TraesCS5A01G057600.1	Wheat	mitochondrion	57.42	59.7
Bra020686.1-P	Field mustard	cytosol	71.29	58.89
Solyc06g083260.2.1	Tomato	cytosol, nucleus	70.33	58.8
PGSC0003DMT400051796	Potato	cytosol	70.33	58.8
VIT_00s0360g00050.t01	Wine grape	cytosol	68.42	56.97
TraesCS5D01G289300.2	Wheat	peroxisome	67.94	55.04
TraesCS5B01G281600.1	Wheat	peroxisome	67.94	55.04
TraesCS5A01G282200.1	Wheat	peroxisome	67.46	54.65
EER97007	Sorghum	nucleus	66.51	54.09
Os09t0504400-01	Rice	nucleus	66.51	54.09
TraesCS6A01G349600.1	Wheat	peroxisome	65.55	53.31
TraesCS6D01G332100.1	Wheat	peroxisome	65.55	53.31
TraesCS6B01G382700.1	Wheat	peroxisome	65.07	52.92
GSMUA_Achr7P02730_001	Banana	cytosol	65.55	52.09
HORVU6Hr1G083890.3	Barley	plastid	65.55	45.21
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	66.51	44.13
Bra006723.1-P	Field mustard	nucleus	21.53	17.05
Bra030056.1-P	Field mustard	cytosol	23.45	15.65
Bra010927.1-P	Field mustard	nucleus	23.92	15.62
Bra013402.1-P	Field mustard	nucleus	25.84	13.33
Bra031514.1-P	Field mustard	cytosol	19.62	12.97
Bra021950.1-P	Field mustard	nucleus	28.71	10.73
Bra012508.1-P	Field mustard	nucleus	21.05	10.65
Bra020954.1-P	Field mustard	nucleus	26.32	10.44
Bra025087.1-P	Field mustard	nucleus	28.23	10.41
Bra032800.1-P	Field mustard	cytosol	16.75	5.63

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	EnsemblPlantsGene:Bra037473	EnsemblPlants:Bra037473.1	EnsemblPlants:Bra037473.1-P
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:CyclinC/Ssn8	InterPro:Cyclin_N	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016538	GO:GO:0016592	GO:GO:0019538	GO:GO:0030234
GO:GO:0045859	UniProt:M4F8R1	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026	PANTHER:PTHR10026:SF7
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000253F92E	:	:	:

Description

AT5G48640 (E=3e-108) | cyclin family protein

Coordinates

chrA06:-:21280125..21281650

Molecular Weight (calculated)

24574.0 Da

IEP (calculated)

7.551

GRAVY (calculated)

-0.078

Length

209 amino acids

Sequence
(BLAST)

001: MSNHIMKLAQ HIKVRQRVVA TAITYMRRVY TRKSMVEFEP RLVAIACLYL ASKAEESIVQ ARNLVFYSKR LYPDEYKYEL KDILGMEMRV LEALDYYLVV
101: FHPYRSLSEF LQDAALNDVN MNQFTWGIVN DTYKMDLILV HPPYRIALAC IYIASVQREK DITAWLQDLN DDMNLVKNIA MEILDFYENY RTITDEKVSS
201: AFSKLALKP

Best Arabidopsis Sequence Match ( AT5G48640.1 )
(BLAST)

001: MAANFWNSSH YKQLLDPEEV DVVHDLDKER GISIDDFKLI KFHMSNHIMK LAQHIKVRQR VVATAITYMR RVYIRKSMVE FEPRLVALTC LYLASKAEES
101: IVQARNLVFY IKRLYPDEYN KYELKDILGM EMKVLEALDY YLVVFHPYRS LSEFLQDAAL NDVNMNQITW GIVNDTYKMD LILVHPPYRI ALACIYIASV
201: HREKDITAWF EDLHEDMNLV KNIAMEILDF YENYRTITEE KVNSAFSKLA LKL

Arabidopsis Description

CYCC1-1Cyclin-C1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.