Factsheet for Bra013402.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78940	Canola	nucleus	99.51	99.51
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	23.21	58.39
Bra031514.1-P	Field mustard	cytosol	42.72	54.75
AT4G19560.1	Thale cress	nucleus	60.49	53.26
Zm00001d027790_P001	Maize	cytosol	33.83	50.74
TraesCS4A01G199600.1	Wheat	nucleus	41.73	40.62
TraesCS4B01G115800.1	Wheat	nucleus	41.48	40.38
Bra006723.1-P	Field mustard	nucleus	26.17	40.15
TraesCS4A01G199300.1	Wheat	nucleus	45.68	39.11
TraesCS4D01G113400.1	Wheat	nucleus	42.72	38.96
TraesCS4D01G113600.1	Wheat	nucleus	46.17	38.96
Zm00001d026030_P014	Maize	nucleus	46.67	38.57
TraesCS4B01G116000.1	Wheat	nucleus	45.43	38.41
TraesCS2A01G323500.1	Wheat	nucleus	46.17	38.4
EES11326	Sorghum	nucleus	46.42	38.37
HORVU2Hr1G083340.2	Barley	nucleus	45.93	38.27
TraesCS2B01G358600.1	Wheat	nucleus	45.93	38.19
Bra020954.1-P	Field mustard	nucleus	49.63	38.14
HORVU4Hr1G021250.6	Barley	nucleus	44.94	38.0
TraesCS2D01G339400.1	Wheat	nucleus	46.17	37.85
Zm00001d020158_P001	Maize	nucleus	38.27	37.71
EER88086	Sorghum	nucleus	43.7	37.18
Bra021950.1-P	Field mustard	nucleus	50.62	36.67
Bra025087.1-P	Field mustard	nucleus	50.86	36.33
HORVU4Hr1G021220.13	Barley	cytosol	38.77	35.68
KRH50485	Soybean	nucleus	49.63	35.45
KRG89442	Soybean	nucleus	49.63	35.39
KRG89447	Soybean	nucleus	49.38	35.27
Bra030056.1-P	Field mustard	cytosol	27.16	35.14
GSMUA_Achr6P04070_001	Banana	nucleus	40.74	33.95
Os12t0485400-01	Rice	nucleus	45.43	33.89
Zm00001d027376_P002	Maize	nucleus, plastid	46.17	33.51
TraesCS5A01G103900.2	Wheat	nucleus	43.21	33.27
HORVU5Hr1G038970.16	Barley	nucleus	44.69	33.21
Bra010927.1-P	Field mustard	nucleus	26.17	33.12
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	31.11	33.07
VIT_00s0125g00270.t01	Wine grape	nucleus	47.16	32.59
TraesCS5D01G121900.1	Wheat	nucleus	43.7	31.61
TraesCS5B01G112100.2	Wheat	nucleus	43.95	30.58
KXG23456	Sorghum	nucleus	39.75	27.38
OQU93178	Sorghum	nucleus	38.77	26.88
Bra037473.1-P	Field mustard	mitochondrion	13.33	25.84
Bra020685.1-P	Field mustard	cytosol	11.6	24.1
Bra020686.1-P	Field mustard	cytosol	13.83	22.13
Bra012508.1-P	Field mustard	nucleus	19.01	18.64
Bra032800.1-P	Field mustard	cytosol	15.8	10.29

Protein Annotations

EnsemblPlants:Bra013402.1	EnsemblPlants:Bra013402.1-P	EnsemblPlantsGene:Bra013402	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF036580	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002546641	UniProt:M4DA92	MapMan:13.1.1.1.9	:

Description

AT4G19560 (E=1e-115) CYCT1;2 | CYCT1;2; cyclin-dependent protein kinase

Coordinates

chrA01:+:5454159..5456253

Molecular Weight (calculated)

45154.9 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.570

Length

405 amino acids

Sequence
(BLAST)

001: MDGTLPVKVP GNQGDDATSV SWYLSRQEIE TNSPSRRDGI GLKKEIRLRK SYCTFLKNLG VRLKVPQITI ATAIVFCHRF FLRQSHAKND RWTIATACMF
101: LAGKAEETPR VLQDVAIVSY EIIHKKDVPA AQRKEVCEQQ KKSVLSAEEL LLSTLNFDLS VGHPYEPLID AIKKYKVEEV KAQFPQVAWS FVNDCYGTTL
201: CLQYKPRQIA AGAFFLAAEH LTVDLQSYGE GLLQEFDISP GQLEDIRGQM LELYEKKHVS TTQGSVVERS NGGDIVHQTV SKEVDSADKC PSSDTGGDPS
301: KANLSQSNDQ IVHDDVSRPE GIEKDNSKIE AGENQDGHSI DEDSQLRAEE VEGEGDKDKK SSEEEGIKQD LSEREVEDVE LRDEDDKTVE MGSQCSLIAT
401: PVRLF

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.