Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 22.61 | 64.6 |
| CDX99363 | Canola | nucleus | 54.35 | 62.03 |
| CDX78940 | Canola | nucleus | 53.48 | 60.74 |
| Bra013402.1-P | Field mustard | nucleus | 53.26 | 60.49 |
| Zm00001d027790_P001 | Maize | cytosol | 32.17 | 54.81 |
| CDY54138 | Canola | cytosol | 37.61 | 54.75 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 37.39 | 54.43 |
| Bra031514.1-P | Field mustard | cytosol | 36.74 | 53.48 |
| AT1G35440.1 | Thale cress | cytosol | 24.78 | 46.15 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 45.65 | 43.12 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 45.43 | 43.0 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 45.22 | 42.71 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 43.91 | 42.71 |
| EES11326 | Sorghum | nucleus | 45.43 | 42.65 |
| Zm00001d020158_P001 | Maize | nucleus | 38.04 | 42.58 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 38.48 | 42.55 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 45.65 | 42.51 |
| Zm00001d026030_P014 | Maize | nucleus | 45.22 | 42.45 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 38.26 | 42.31 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 43.7 | 41.96 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 43.7 | 41.96 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 43.7 | 41.88 |
| EER88086 | Sorghum | nucleus | 42.83 | 41.39 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 39.57 | 40.99 |
| AT4G19600.1 | Thale cress | nucleus | 47.61 | 40.48 |
| AT1G27630.1 | Thale cress | cytosol | 26.74 | 38.8 |
| AT5G45190.2 | Thale cress | nucleus | 49.57 | 38.64 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 31.96 | 38.58 |
| KRG89447 | Soybean | nucleus | 46.96 | 38.1 |
| KRG89442 | Soybean | nucleus | 46.96 | 38.03 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 46.09 | 37.99 |
| KRH50485 | Soybean | nucleus | 46.74 | 37.92 |
| Os12t0485400-01 | Rice | nucleus | 44.35 | 37.57 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 39.35 | 37.24 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 41.96 | 36.69 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 35.0 | 36.59 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 42.83 | 36.15 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 45.43 | 35.67 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 42.17 | 34.64 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 42.17 | 33.33 |
| OQU93178 | Sorghum | nucleus | 40.43 | 31.85 |
| KXG23456 | Sorghum | nucleus | 37.39 | 29.25 |
| AT5G48640.1 | Thale cress | cytosol | 12.83 | 23.32 |
| AT5G48630.2 | Thale cress | cytosol, nucleus, plastid | 12.61 | 22.66 |
| AT2G26430.1 | Thale cress | cytosol | 17.83 | 19.71 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | EntrezGene:827698 | ProteinID:AEE84199.1 | EMBL:AK221363 | EMBL:AK221364 |
| ArrayExpress:AT4G19560 | EnsemblPlantsGene:AT4G19560 | RefSeq:AT4G19560 | TAIR:AT4G19560 | RefSeq:AT4G19560-TAIR-G | EnsemblPlants:AT4G19560.1 |
| TAIR:AT4G19560.1 | Unigene:At.54410 | ProteinID:CAA16933.1 | ProteinID:CAB78958.1 | Symbol:CYCT1;2 | ncoils:Coil |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0000307 | GO:GO:0003674 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016538 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0045737 | GO:GO:0045944 | GO:GO:0051301 | GO:GO:1901409 |
| RefSeq:NP_193691.2 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF036580 | PO:PO:0000293 | PANTHER:PTHR10026 |
| PANTHER:PTHR10026:SF103 | UniProt:Q56YF8 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI000150581B | SEG:seg |
Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
Coordinates
chr4:+:10661387..10664716
Molecular Weight (calculated)
51815.6 Da
IEP (calculated)
4.331
GRAVY (calculated)
-0.514
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.