Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78940 | Canola | nucleus | 90.82 | 90.37 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 23.57 | 59.01 |
| CDY54138 | Canola | cytosol | 44.91 | 57.28 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 43.42 | 55.38 |
| AT4G19560.1 | Thale cress | nucleus | 62.03 | 54.35 |
| Zm00001d027790_P001 | Maize | cytosol | 33.99 | 50.74 |
| CDX71123 | Canola | nucleus | 27.79 | 42.42 |
| CDX88692 | Canola | nucleus | 27.3 | 41.67 |
| CDY26395 | Canola | nucleus | 52.11 | 39.92 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 41.19 | 39.9 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 40.94 | 39.66 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 46.15 | 39.32 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 46.9 | 38.81 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 46.15 | 38.75 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 46.65 | 38.68 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 45.91 | 38.62 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 46.65 | 38.6 |
| CDX76472 | Canola | nucleus | 50.62 | 38.56 |
| Zm00001d026030_P014 | Maize | nucleus | 46.65 | 38.37 |
| EES11326 | Sorghum | nucleus | 46.65 | 38.37 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 42.18 | 38.29 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 46.9 | 38.26 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 45.41 | 38.2 |
| CDY09329 | Canola | nucleus | 50.12 | 38.04 |
| Zm00001d020158_P001 | Maize | nucleus | 38.46 | 37.71 |
| EER88086 | Sorghum | nucleus | 44.17 | 37.4 |
| CDX99359 | Canola | nucleus | 48.88 | 36.89 |
| CDY65933 | Canola | nucleus | 51.61 | 36.62 |
| CDX82583 | Canola | nucleus | 51.12 | 36.33 |
| CDY39416 | Canola | nucleus | 51.36 | 35.75 |
| KRH50485 | Soybean | nucleus | 49.63 | 35.27 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 38.46 | 35.23 |
| KRG89442 | Soybean | nucleus | 49.63 | 35.21 |
| KRG89447 | Soybean | nucleus | 49.38 | 35.1 |
| Os12t0485400-01 | Rice | nucleus | 46.15 | 34.25 |
| CDY03933 | Canola | cytosol | 26.55 | 34.19 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 41.19 | 34.16 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 46.9 | 33.87 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 32.01 | 33.86 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 44.17 | 33.84 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 45.41 | 33.58 |
| CDY60279 | Canola | cytosol | 26.05 | 33.55 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 47.89 | 32.94 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 44.66 | 32.14 |
| CDY11776 | Canola | cytosol | 25.31 | 31.88 |
| CDX90099 | Canola | nucleus | 25.31 | 31.68 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 44.91 | 31.1 |
| KXG23456 | Sorghum | nucleus | 39.95 | 27.38 |
| OQU93178 | Sorghum | nucleus | 39.21 | 27.05 |
| CDY51052 | Canola | cytosol | 14.64 | 23.51 |
| CDX85352 | Canola | cytosol | 14.64 | 23.41 |
| CDY66082 | Canola | cytosol | 14.39 | 23.02 |
| CDX86291 | Canola | cytosol | 14.39 | 23.02 |
| CDY69301 | Canola | cytosol | 14.14 | 22.53 |
| CDY51053 | Canola | cytosol | 14.14 | 22.53 |
| CDY03883 | Canola | nucleus | 19.35 | 18.7 |
| CDY51595 | Canola | nucleus | 18.86 | 18.4 |
| CDY05665 | Canola | endoplasmic reticulum, extracellular | 4.71 | 17.43 |
| CDY27590 | Canola | cytosol | 15.14 | 9.81 |
| CDX84949 | Canola | cytosol | 4.71 | 5.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.9 | GO:A0A078EJ48 | EnsemblPlants:CDX99363 | ProteinID:CDX99363 | ProteinID:CDX99363.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00107668001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF036580 |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0004EC91DD | SEG:seg |
Description
BnaC01g11890D
Coordinates
chrLK031910:-:104977..107770
Molecular Weight (calculated)
44879.9 Da
IEP (calculated)
4.878
GRAVY (calculated)
-0.595
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGPLPVKVP GNQGDDATSV SWYLSRREIE TNSPSRRDGM GLKMEIRLRK SYCTFLKNLG VRLKVPQITI ATAIVFCHRF FLRQSHAKND RWTIATACMF
101: LAGKAEETPR VLQDVAIVSY EIIHKKDVPP AQRKEVCEQQ KKCVLSAEEL VLSTLNFDLS VGHPYEPLID AIKKYKVEEV KSQFPQVAWS FVNDCYGTTL
201: CLQYKPRQIA AGAFFLAAEH LTVDLQSYGE GLFQEFDTTP GQLEDIRGQM LELYEKKHVS TTQGSIVERS NGGEMVHQPV SKEVASTDKC PSSDTGGGGP
301: SKVNLSQSND QIVDDDVSRP EGIEKDNSKI EAGENPNGHS IDEDSQLRAE EVKDKGEKDK KSDEGIKKMD LSERGAEDVE ELRDEDDKTV EMGSQSSLIA
401: TQV
101: LAGKAEETPR VLQDVAIVSY EIIHKKDVPP AQRKEVCEQQ KKCVLSAEEL VLSTLNFDLS VGHPYEPLID AIKKYKVEEV KSQFPQVAWS FVNDCYGTTL
201: CLQYKPRQIA AGAFFLAAEH LTVDLQSYGE GLFQEFDTTP GQLEDIRGQM LELYEKKHVS TTQGSIVERS NGGEMVHQPV SKEVASTDKC PSSDTGGGGP
301: SKVNLSQSND QIVDDDVSRP EGIEKDNSKI EAGENPNGHS IDEDSQLRAE EVKDKGEKDK KSDEGIKKMD LSERGAEDVE ELRDEDDKTV EMGSQSSLIA
401: TQV
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.