CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	25.66	85.09
CDX76472	Canola	nucleus	84.27	85.07
Bra020954.1-P	Field mustard	nucleus	83.9	85.01
CDY09329	Canola	nucleus	83.71	84.18
AT4G19600.1	Thale cress	nucleus	84.46	83.36
CDY26395	Canola	nucleus	71.91	73.0
CDX82583	Canola	nucleus	75.84	71.43
CDY39416	Canola	nucleus	76.4	70.47
CDY65933	Canola	nucleus	74.34	69.89
Zm00001d027790_P001	Maize	cytosol	33.52	66.3
EES11326	Sorghum	nucleus	52.62	57.35
Zm00001d026030_P014	Maize	nucleus	52.06	56.73
TraesCS4A01G199300.1	Wheat	nucleus	49.81	56.24
HORVU4Hr1G021250.6	Barley	nucleus	50.0	55.74
TraesCS4D01G113600.1	Wheat	nucleus	50.0	55.62
HORVU2Hr1G083340.2	Barley	nucleus	50.37	55.35
TraesCS4B01G116000.1	Wheat	nucleus	49.63	55.32
TraesCS2A01G323500.1	Wheat	nucleus	50.37	55.24
TraesCS2B01G358600.1	Wheat	nucleus	50.0	54.83
Zm00001d020158_P001	Maize	nucleus	42.13	54.74
TraesCS2D01G339400.1	Wheat	nucleus	50.37	54.45
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	38.58	54.07
KRH50485	Soybean	nucleus	57.3	53.97
KRG89442	Soybean	nucleus	56.55	53.17
TraesCS4A01G199600.1	Wheat	nucleus	41.39	53.12
TraesCS4B01G115800.1	Wheat	nucleus	41.2	52.88
KRG89447	Soybean	nucleus	55.62	52.38
EER88086	Sorghum	nucleus	46.63	52.31
VIT_00s0125g00270.t01	Wine grape	nucleus	56.18	51.19
TraesCS4D01G113400.1	Wheat	nucleus	42.32	50.9
Zm00001d027376_P002	Maize	nucleus, plastid	52.81	50.54
Os12t0485400-01	Rice	nucleus	50.37	49.54
TraesCS5A01G103900.2	Wheat	nucleus	48.69	49.43
GSMUA_Achr6P04070_001	Banana	nucleus	44.76	49.18
HORVU5Hr1G038970.16	Barley	nucleus	50.0	48.99
CDX99363	Canola	nucleus	36.89	48.88
CDX71123	Canola	nucleus	23.97	48.48
CDX78940	Canola	nucleus	36.52	48.15
CDX88692	Canola	nucleus	23.78	48.11
TraesCS5D01G121900.1	Wheat	nucleus	50.37	48.04
TraesCS5B01G112100.2	Wheat	nucleus	51.5	47.25
CDY24526	Canola	cytosol, nucleus, peroxisome	27.53	46.52
CDY54138	Canola	cytosol	27.53	46.52
HORVU4Hr1G021220.13	Barley	cytosol	35.96	43.64
OQU93178	Sorghum	nucleus	45.69	41.78
CDY03933	Canola	cytosol	23.78	40.58
CDY60279	Canola	cytosol	23.6	40.26
KXG23456	Sorghum	nucleus	43.82	39.8
CDY11776	Canola	cytosol	22.85	38.12
CDX90099	Canola	nucleus	22.66	37.58
CDY03883	Canola	nucleus	18.91	24.22
CDY51595	Canola	nucleus	18.54	23.97
CDX86291	Canola	cytosol	10.86	23.02
CDY51053	Canola	cytosol	10.86	22.92
CDY69301	Canola	cytosol	10.86	22.92
CDY66082	Canola	cytosol	10.67	22.62
CDX85352	Canola	cytosol	10.67	22.62
CDY51052	Canola	cytosol	10.49	22.31
CDY05665	Canola	endoplasmic reticulum, extracellular	4.49	22.02
CDY27590	Canola	cytosol	13.86	11.9
CDX84949	Canola	cytosol	4.87	7.41

Protein Annotations

EnsemblPlants:CDX99359	EnsemblPlantsGene:GSBRNA2T00107664001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	ProteinID:CDX99359	ProteinID:CDX99359.1
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EE22A3	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2

Description

BnaC01g11930D

Coordinates

chrLK031910:-:85479..88533

Molecular Weight (calculated)

59596.0 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.782

Length

534 amino acids

Sequence
(BLAST)

001: MAGVLGGECS YNESGVSSHS RNPNENQDEV SRWYFGRKEI EENSPSRLDK IDLKKETYLR KSYCTFLQDL GMKLKVPQIT IATSIIFCHR FFIRQSHARN
101: DRRMIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPV TAQKIKQKEV YEQQKELILI GEKIVLSTLG FDFNVNHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GDKVWWQEFD VTPRILEDVS NQMLELYEQN SVPASQGSQV ESSVGGGSAQ QVGSRPISAR
301: PAHEHSNSDN PGGSSKATQN QSNDNGSGEA GSVITEHTET HQADQSRTKV EAPEKDRTEK IDANLPDDSI PLDKSRSVVK SGDAPVSQSP KDIKLLRDKV
401: KAKLEAKKSQ GEKTKKKDVI DEDDLIEREL EDVEIAVEDA KDSQKKIGTE HGEILDGNNL VGNSEEGEMV DDVSSTMPSR KRKMESPCEK QLGEGKKQHI
501: DNSEDAEGGL KTSRVESSHN SHGDREARRH SQER

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.