Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G199300.1 | Wheat | nucleus | 97.08 | 98.31 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 97.91 | 97.71 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 94.57 | 94.57 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 73.28 | 92.13 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 30.27 | 90.06 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 85.39 | 83.98 |
| EES11326 | Sorghum | nucleus | 83.51 | 81.63 |
| Zm00001d026030_P014 | Maize | nucleus | 82.46 | 80.61 |
| EER88086 | Sorghum | nucleus | 72.86 | 73.32 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 63.47 | 73.08 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 80.79 | 69.35 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 69.1 | 65.29 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 62.21 | 58.09 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 65.34 | 53.78 |
| KRH50485 | Soybean | nucleus | 62.42 | 52.73 |
| KRG89442 | Soybean | nucleus | 62.21 | 52.46 |
| CDY26395 | Canola | nucleus | 56.99 | 51.9 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 67.43 | 51.85 |
| Bra020954.1-P | Field mustard | nucleus | 56.99 | 51.8 |
| KRG89447 | Soybean | nucleus | 61.17 | 51.68 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 63.05 | 51.54 |
| CDX76472 | Canola | nucleus | 56.78 | 51.42 |
| AT1G35440.1 | Thale cress | cytosol | 26.51 | 51.42 |
| CDY09329 | Canola | nucleus | 56.78 | 51.22 |
| KRH13708 | Soybean | nucleus | 64.09 | 50.66 |
| AT4G19600.1 | Thale cress | nucleus | 56.99 | 50.46 |
| KRH43745 | Soybean | nucleus | 63.88 | 50.08 |
| CDX71123 | Canola | nucleus | 27.56 | 50.0 |
| CDX99359 | Canola | nucleus | 55.32 | 49.63 |
| Bra025087.1-P | Field mustard | nucleus | 58.25 | 49.21 |
| Bra021950.1-P | Field mustard | nucleus | 57.41 | 49.2 |
| Bra006723.1-P | Field mustard | nucleus | 26.72 | 48.48 |
| CDX88692 | Canola | nucleus | 26.72 | 48.48 |
| CDX82583 | Canola | nucleus | 57.2 | 48.32 |
| CDY65933 | Canola | nucleus | 57.2 | 48.24 |
| CDY39416 | Canola | nucleus | 58.25 | 48.19 |
| Solyc10g078180.1.1 | Tomato | nucleus | 62.21 | 47.99 |
| AT5G45190.2 | Thale cress | nucleus | 58.25 | 47.29 |
| CDX99363 | Canola | nucleus | 38.62 | 45.91 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 30.06 | 45.57 |
| Bra013402.1-P | Field mustard | nucleus | 38.41 | 45.43 |
| CDX78940 | Canola | nucleus | 38.41 | 45.43 |
| Bra031514.1-P | Field mustard | cytosol | 29.44 | 44.62 |
| CDY54138 | Canola | cytosol | 29.44 | 44.62 |
| AT4G19560.1 | Thale cress | nucleus | 41.96 | 43.7 |
| TraesCS3B01G227700.2 | Wheat | nucleus | 21.5 | 28.93 |
| TraesCS5B01G281600.1 | Wheat | peroxisome | 13.78 | 25.58 |
| TraesCS6B01G382700.1 | Wheat | peroxisome | 13.57 | 25.29 |
| TraesCS6B01G362300.1 | Wheat | nucleus | 20.67 | 24.15 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 31.32 | 19.89 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G116000.1 | EnsemblPlantsGene:TraesCS4B01G116000 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | PIRSF:PIRSF036580 | SMART:SM00385 | SUPFAM:SSF47954 |
| TIGR:cd00043 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:-:132852878..132856263
Molecular Weight (calculated)
54332.4 Da
IEP (calculated)
8.229
GRAVY (calculated)
-0.743
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIMQTSDSS HHGIVENSPY RTPYGRHVES GNLGGSWYFS RKEIEENSLS RKDGIDLKES YLRKSYCTFL QDFGMRLKVP QVTIATAIVF CHRFFLRQSH
101: AKNDRLTIAT VCMFLAGKVE ETPRPLKDVV LISYEIIHKK DPAAVARIKQ KEVYEQQKEL ILIGERAVLI TLGFDMNVHH PYKPLVEAIK KFKVAQNALA
201: QVAWNFVNDG LRTSLCLQFK PNHITAGAIF LAAKFLKVKL PSDGEKVWWQ EFDVTPRQLE EASNQMLELY EQNRVVPPPS QGNDTECSSA SVVNPRAVGK
301: APGAADERHA HGNHQAPKQS SMVGLPEKQN SNQRIPKVEA KDGIASSNEG PNMSSSMDAM KKIDKDKVKA ALEKRRKSKG DAGRKVDIMD DDDLIERELE
401: HGVEMAVKDE KKHDRRQSWP QPPHQNGTRT AENAEEGELS MDSQEYLSTV TELDDRKRKD VYDHRSYDHG ERDLKRARS
101: AKNDRLTIAT VCMFLAGKVE ETPRPLKDVV LISYEIIHKK DPAAVARIKQ KEVYEQQKEL ILIGERAVLI TLGFDMNVHH PYKPLVEAIK KFKVAQNALA
201: QVAWNFVNDG LRTSLCLQFK PNHITAGAIF LAAKFLKVKL PSDGEKVWWQ EFDVTPRQLE EASNQMLELY EQNRVVPPPS QGNDTECSSA SVVNPRAVGK
301: APGAADERHA HGNHQAPKQS SMVGLPEKQN SNQRIPKVEA KDGIASSNEG PNMSSSMDAM KKIDKDKVKA ALEKRRKSKG DAGRKVDIMD DDDLIERELE
401: HGVEMAVKDE KKHDRRQSWP QPPHQNGTRT AENAEEGELS MDSQEYLSTV TELDDRKRKD VYDHRSYDHG ERDLKRARS
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.