CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031514.1-P	Field mustard	cytosol	96.84	96.84
CDY54138	Canola	cytosol	91.14	91.14
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	24.05	47.2
Zm00001d027790_P001	Maize	cytosol	37.97	44.44
CDX99363	Canola	nucleus	55.38	43.42
CDX78940	Canola	nucleus	54.43	42.47
AT4G19560.1	Thale cress	nucleus	54.43	37.39
CDX71123	Canola	nucleus	30.06	35.98
CDX88692	Canola	nucleus	29.75	35.61
TraesCS4A01G199600.1	Wheat	nucleus	43.35	32.93
TraesCS4B01G115800.1	Wheat	nucleus	43.04	32.69
CDY60279	Canola	cytosol	31.65	31.95
CDY03933	Canola	cytosol	31.01	31.31
Zm00001d020158_P001	Maize	nucleus	40.51	31.14
TraesCS4D01G113400.1	Wheat	nucleus	43.35	30.86
TraesCS4A01G199300.1	Wheat	nucleus	45.57	30.44
TraesCS4B01G116000.1	Wheat	nucleus	45.57	30.06
CDY26395	Canola	nucleus	50.0	30.04
TraesCS4D01G113600.1	Wheat	nucleus	45.57	30.0
HORVU4Hr1G021250.6	Barley	nucleus	45.25	29.85
EES11326	Sorghum	nucleus	46.2	29.8
TraesCS2A01G323500.1	Wheat	nucleus	45.89	29.77
HORVU2Hr1G083340.2	Barley	nucleus	45.57	29.63
Zm00001d026030_P014	Maize	nucleus	45.89	29.59
TraesCS2B01G358600.1	Wheat	nucleus	45.57	29.57
TraesCS2D01G339400.1	Wheat	nucleus	45.89	29.35
GSMUA_Achr6P04070_001	Banana	nucleus	44.3	28.81
CDY11776	Canola	cytosol	29.11	28.75
CDX76472	Canola	nucleus	48.1	28.73
HORVU4Hr1G021220.13	Barley	cytosol	39.87	28.64
CDY09329	Canola	nucleus	48.1	28.63
CDX90099	Canola	nucleus	29.11	28.57
CDX82583	Canola	nucleus	50.32	28.04
EER88086	Sorghum	nucleus	42.09	27.94
CDX99359	Canola	nucleus	46.52	27.53
CDY65933	Canola	nucleus	49.37	27.46
CDY39416	Canola	nucleus	49.68	27.12
TraesCS5A01G103900.2	Wheat	nucleus	44.62	26.81
KRH50485	Soybean	nucleus	47.78	26.63
KRG89442	Soybean	nucleus	47.78	26.58
Zm00001d027376_P002	Maize	nucleus, plastid	46.84	26.52
Os12t0485400-01	Rice	nucleus	45.57	26.52
KRG89447	Soybean	nucleus	47.47	26.45
HORVU5Hr1G038970.16	Barley	nucleus	45.25	26.24
TraesCS5D01G121900.1	Wheat	nucleus	44.94	25.36
VIT_00s0125g00270.t01	Wine grape	nucleus	45.89	24.74
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	29.75	24.67
TraesCS5B01G112100.2	Wheat	nucleus	44.3	24.05
KXG23456	Sorghum	nucleus	41.14	22.11
OQU93178	Sorghum	nucleus	39.24	21.23
CDY51053	Canola	cytosol	15.82	19.76
CDY69301	Canola	cytosol	15.82	19.76
CDX85352	Canola	cytosol	15.51	19.44
CDY51052	Canola	cytosol	15.19	19.12
CDX86291	Canola	cytosol	15.19	19.05
CDY66082	Canola	cytosol	14.87	18.65
CDY03883	Canola	nucleus	23.42	17.75
CDY51595	Canola	nucleus	22.47	17.19
CDY05665	Canola	endoplasmic reticulum, extracellular	5.7	16.51
CDY27590	Canola	cytosol	17.41	8.84
CDX84949	Canola	cytosol	3.8	3.42

Protein Annotations

EnsemblPlants:CDY24526	EnsemblPlantsGene:GSBRNA2T00026835001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	ProteinID:CDY24526	ProteinID:CDY24526.1	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI0004EEA19D	UniProt:A0A078GGR3	MapMan:13.1.1.1.9	:	:

Description

BnaA01g22300DBnaA01g22300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGR3]

Coordinates

chrLK032160:+:354050..355467

Molecular Weight (calculated)

35384.9 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.288

Length

316 amino acids

Sequence
(BLAST)

001: MFPGQDRWYF SREEIDNNSP SRQDGIDLTE ETSLRKAYCS FLIDLGRRFK LDQVTVATAI VFCHRFFLLQ SHAKNDKWII AAVCMFLSAK VESTPVDLKT
101: LIITSEEILH KKVIAAEERQ GVYEHYKGIV LIGEKLVLST LNFDLSVDLP FDLLVQAMKK FILDTATQGT FPPAAWKFVK DSFWTTLCLQ YQPRHIAAGA
201: FFLAAMHIKM DAKSHGESWC QHFDITRRQL NDIRGQMGEL YYGKKPIPTF TGGIGETSNS GDVVQQQPVP TDNCPSSVIE GGSSSVADGS LQDQSCPEGV
301: EKDSPDREAG DNQEDS

Best Arabidopsis Sequence Match ( AT1G35440.1 )
(BLAST)

001: MAETKNWYNT REAIEKTSPS RLDGINLKEE TFQRWSYTSF LQELGQRLNN PQKTIATAIV LCQRFFTRQS LTKNDPKTVA IICMFIAGKV EGSPRPAGDV
101: VFVSYRVLFN KEPLRDVFER LKMTVLTGEK LVLSTLECDL EIEHPYKLVM DWVKRSVKTE DGRRLCQAAF NFVNDSLRTS LCLQFGPSQI ASAAIYIGLS
201: MCKMTLPCDG DKAWWREFDV TKRQLWEICD QMLDLYVQDF VVPRHGL

Arabidopsis Description

CYCT1-1Putative cyclin-T1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.