Factsheet for TraesCS5D01G121900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G103900.2	Wheat	nucleus	91.79	97.72
TraesCS5B01G112100.2	Wheat	nucleus	97.5	93.81
HORVU5Hr1G038970.16	Barley	nucleus	90.89	93.39
Zm00001d027790_P001	Maize	cytosol	35.18	72.96
Os12t0485400-01	Rice	nucleus	68.57	70.72
Zm00001d020158_P001	Maize	nucleus	50.18	68.37
TraesCS4D01G113600.1	Wheat	nucleus	56.07	65.42
TraesCS2D01G339400.1	Wheat	nucleus	57.32	64.98
GSMUA_Achr6P30140_001	Banana	nucleus	54.29	59.96
TraesCS4D01G113400.1	Wheat	nucleus	47.14	59.46
OQU93178	Sorghum	nucleus	60.18	57.71
GSMUA_Achr6P31620_001	Banana	cytosol	51.79	56.53
KXG23456	Sorghum	nucleus	55.71	53.06
KRH50485	Soybean	nucleus	53.57	52.91
Bra020954.1-P	Field mustard	nucleus	49.64	52.75
CDY09329	Canola	nucleus	50.0	52.73
KRG89442	Soybean	nucleus	53.21	52.46
CDX76472	Canola	nucleus	49.46	52.36
CDY26395	Canola	nucleus	49.11	52.28
AT1G35440.1	Thale cress	cytosol	23.04	52.23
KRG89447	Soybean	nucleus	52.5	51.85
AT4G19600.1	Thale cress	nucleus	50.0	51.76
VIT_00s0125g00270.t01	Wine grape	nucleus	53.39	51.02
VIT_19s0027g01670.t01	Wine grape	nucleus	56.07	50.4
CDX99359	Canola	nucleus	48.04	50.37
CDX71123	Canola	nucleus	23.57	50.0
CDX82583	Canola	nucleus	50.0	49.38
Bra025087.1-P	Field mustard	nucleus	50.0	49.38
CDX88692	Canola	nucleus	23.21	49.24
Bra021950.1-P	Field mustard	nucleus	48.93	49.02
Bra006723.1-P	Field mustard	nucleus	23.04	48.86
KRH13708	Soybean	nucleus	52.86	48.84
KRH43745	Soybean	nucleus	53.04	48.61
Solyc10g078180.1.1	Tomato	nucleus	53.75	48.47
CDY39416	Canola	nucleus	50.0	48.36
CDY65933	Canola	nucleus	48.75	48.06
AT5G45190.2	Thale cress	nucleus	50.36	47.8
CDY24526	Canola	cytosol, nucleus, peroxisome	25.36	44.94
CDX99363	Canola	nucleus	32.14	44.66
CDY54138	Canola	cytosol	25.18	44.62
Bra031514.1-P	Field mustard	cytosol	25.18	44.62
Bra013402.1-P	Field mustard	nucleus	31.61	43.7
CDX78940	Canola	nucleus	31.61	43.7
AT4G19560.1	Thale cress	nucleus	34.64	42.17
TraesCS3D01G199600.2	Wheat	nucleus	19.11	30.06
TraesCS6D01G332100.1	Wheat	peroxisome	12.32	26.85
TraesCS5D01G289300.2	Wheat	peroxisome	12.32	26.74
TraesCS6D01G310800.2	Wheat	nucleus	16.61	22.68
TraesCS6D01G087700.1	Wheat	nucleus	26.25	17.58

Protein Annotations

EnsemblPlants:TraesCS5D01G121900.1	EnsemblPlantsGene:TraesCS5D01G121900	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
ncoils:Coil	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:

Description

No Description!

Coordinates

chr5D:+:175758944..175770106

Molecular Weight (calculated)

62600.4 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.841

Length

560 amino acids

Sequence
(BLAST)

001: MAMLPSDSSH HGIVENSPYR ITKSGNKEAG KLSASWYFSR KEIEENSPSK RDGIDLKKET YLRKSYCTYL QDLGMRLKVP QVTIATSIVF CHRFYLRQSH
101: AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI LVSYELIHKK DPAAGQKIKQ REVYDRQKEL ILLGERVVLA TLGFDLNVHH PYKPLVETIK KFKITHNALP
201: QVAWNFVNDG LRTSLCLQFK PHHIAAGALF LAGKFLKVKF LPDDGEKAWY QEFDVTPRQL EEVSNQMLEL YEQNRVVQSQ PTNGNEAEGS SAGVPNQRIS
301: VKAEANSEEP PVVHHPASKQ SDSNPSTSTG VPIHNGAEHS KPHKQIGSQK SLQNDNGGHE NDKTSSQSGG RVDTSTKDGL HDGTKSLPRS SRPSDKPGIP
401: TEEKPLPSHA SSSESRDGNL SNSGDPSVSS SMMDAMNKID KDKVKAALEK RRKFKGDVAR KVHVMDDDDL LERELEHGVE LAVEDEKIKQ ERNDCSMHQE
501: DHRNADGVAE NGDNNGDQNV PETAKEAEVL VDIKDEHSLT KRNDGFEHKP QHLVMHQSTT

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.