Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012392_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017392_P009 | Maize | cytosol | 84.1 | 86.28 |
| EES07541 | Sorghum | plastid | 83.51 | 80.63 |
| Os02t0438200-01 | Rice | nucleus | 56.02 | 59.84 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 33.58 | 54.07 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 12.63 | 52.8 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 29.42 | 47.83 |
| Zm00001d027790_P001 | Maize | cytosol | 19.02 | 47.41 |
| Solyc07g032480.2.1 | Tomato | nucleus | 24.96 | 40.68 |
| PGSC0003DMT400044127 | Potato | nucleus | 25.26 | 40.09 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 25.56 | 38.91 |
| Bra030056.1-P | Field mustard | cytosol | 17.83 | 38.34 |
| CDY60279 | Canola | cytosol | 17.83 | 38.34 |
| CDY03933 | Canola | cytosol | 17.68 | 38.02 |
| AT1G27630.1 | Thale cress | cytosol | 17.38 | 36.91 |
| Bra010927.1-P | Field mustard | nucleus | 17.24 | 36.25 |
| Zm00001d033021_P001 | Maize | cytosol | 9.81 | 36.07 |
| CDX90099 | Canola | nucleus | 17.24 | 36.02 |
| CDY11776 | Canola | cytosol | 17.09 | 35.94 |
| Zm00001d020158_P001 | Maize | nucleus | 21.4 | 35.04 |
| Zm00001d026030_P014 | Maize | nucleus | 23.92 | 32.86 |
| Zm00001d015164_P001 | Maize | cytosol | 24.96 | 30.88 |
| Zm00001d019681_P002 | Maize | nucleus | 9.36 | 29.58 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 23.77 | 28.67 |
| Zm00001d040936_P002 | Maize | plastid | 10.55 | 21.65 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 9.51 | 20.32 |
| Zm00001d019684_P002 | Maize | mitochondrion | 6.09 | 14.7 |
| Zm00001d033023_P001 | Maize | cytosol | 4.61 | 12.6 |
Protein Annotations
| EnsemblPlants:Zm00001d051291_P003 | EnsemblPlants:Zm00001d051291_T003 | EnsemblPlantsGene:Zm00001d051291 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF102 |
| PFAM:PF00134 | ProteinID:AQK53964.1 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | TMHMM:TMhelix |
| UniParc:UPI000845575E | UniProt:A0A1D6Q616 | MapMan:13.1.1.1.9 | : | : | : |
Description
Putative cyclin-T1 family protein
Coordinates
chr4:-:151994379..152000527
Molecular Weight (calculated)
75749.4 Da
IEP (calculated)
5.072
GRAVY (calculated)
-0.246
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGVPNILEK SSHECMYSWY FTREELEKFS PSRKDGITEN KESEIRHLYC SFIRDVGIRL KLPQMTLATA VMLCHRFYLH QSLAKNGWQV RDYIVVPVMV
101: ADVYEKRQEC RVSLPSILHN LFVVCLLWTS SSSGTYFYFL LLVLMVPFVI TLFQTVATVC VFLASKVEDT PCPLDHVVRV AYETMYRRDT AAAQRIRQKD
201: VFEKQKALIL IGERLLLTTI RFDFNIQHPY RPLLDAMQNL GINQKEVKQV AWNFVNDWLK TTLCLQYKPQ YIAAGSLYLA AKLHNIKLPL HGAHVWWHQF
301: DVAPKPLEAV IHQMMELAAL KKLMPARPNP VKLKETLCEA KLSLSNSPDS VLNQSNLLIS SSSPDIGEPS DKVQVDSCQY LISSHMGDCR VSGPDSSSLN
401: TCANRNVSCK AHDEESLDQA LIIKHDSGMM PSSNQTSLYA TVGTEGSAEL KQDVSHCNDF NIRVNDESLN QVLRNQHGDA IPLPDVVSLD AKVDKERSWC
501: VEPLIANSDC CTDSVNVDSL CTDQRLADAP SGPTADAPSM LAEEESYPFS AKLENIDVAR IKGLLMKRKS RREIQDRAIA SDGLSEEDWI ERELESGIVT
601: NQEANCAAIS DELSDEAWIE RELESGIVVG PRNEQAITFD GLSEDDWIER ELESGIIVEP APATKKRKLE SSC
101: ADVYEKRQEC RVSLPSILHN LFVVCLLWTS SSSGTYFYFL LLVLMVPFVI TLFQTVATVC VFLASKVEDT PCPLDHVVRV AYETMYRRDT AAAQRIRQKD
201: VFEKQKALIL IGERLLLTTI RFDFNIQHPY RPLLDAMQNL GINQKEVKQV AWNFVNDWLK TTLCLQYKPQ YIAAGSLYLA AKLHNIKLPL HGAHVWWHQF
301: DVAPKPLEAV IHQMMELAAL KKLMPARPNP VKLKETLCEA KLSLSNSPDS VLNQSNLLIS SSSPDIGEPS DKVQVDSCQY LISSHMGDCR VSGPDSSSLN
401: TCANRNVSCK AHDEESLDQA LIIKHDSGMM PSSNQTSLYA TVGTEGSAEL KQDVSHCNDF NIRVNDESLN QVLRNQHGDA IPLPDVVSLD AKVDKERSWC
501: VEPLIANSDC CTDSVNVDSL CTDQRLADAP SGPTADAPSM LAEEESYPFS AKLENIDVAR IKGLLMKRKS RREIQDRAIA SDGLSEEDWI ERELESGIVT
601: NQEANCAAIS DELSDEAWIE RELESGIVVG PRNEQAITFD GLSEDDWIER ELESGIIVEP APATKKRKLE SSC
001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
Arabidopsis Description
CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.