Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G125000.1 | Wheat | nucleus | 95.89 | 89.66 |
| TraesCS6D01G087700.1 | Wheat | nucleus | 96.31 | 81.22 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 80.57 | 62.49 |
| Os02t0133000-00 | Rice | extracellular | 34.89 | 55.16 |
| KXG29406 | Sorghum | cytosol | 36.17 | 46.11 |
| Zm00001d015164_P001 | Maize | cytosol | 34.33 | 44.49 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 24.54 | 41.39 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 23.69 | 40.34 |
| Bra030056.1-P | Field mustard | cytosol | 16.74 | 37.7 |
| CDY03933 | Canola | cytosol | 16.6 | 37.38 |
| CDY60279 | Canola | cytosol | 16.6 | 37.38 |
| AT1G27630.1 | Thale cress | cytosol | 16.45 | 36.59 |
| Bra010927.1-P | Field mustard | nucleus | 16.6 | 36.56 |
| CDX90099 | Canola | nucleus | 16.6 | 36.34 |
| CDY11776 | Canola | cytosol | 16.45 | 36.25 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 22.55 | 35.97 |
| Solyc07g032480.2.1 | Tomato | nucleus | 18.87 | 32.2 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 18.87 | 31.97 |
| PGSC0003DMT400044127 | Potato | nucleus | 19.01 | 31.6 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 20.71 | 30.87 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 21.13 | 30.6 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 20.14 | 27.0 |
| TraesCS3A01G196600.1 | Wheat | nucleus | 13.48 | 26.69 |
| TraesCS6A01G331500.1 | Wheat | nucleus | 14.04 | 24.03 |
| TraesCS5A01G057600.1 | Wheat | mitochondrion | 6.24 | 21.89 |
| TraesCS5A01G282200.1 | Wheat | peroxisome | 7.8 | 21.32 |
| TraesCS6A01G349600.1 | Wheat | peroxisome | 7.66 | 21.01 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G096600.1 | EnsemblPlantsGene:TraesCS6A01G096600 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF76 | PFAM:PF00134 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 |
| TIGR:cd00043 | MapMan:13.1.1.1.9 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:63782433..63786447
Molecular Weight (calculated)
77090.0 Da
IEP (calculated)
11.053
GRAVY (calculated)
-0.580
Length
705 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGGERGRS WYLSKEEIEE GSPSRKDGMP AAREAQLRSV YSSYIRDVGR RLGVPDITIA TGTVLCHRFY LHQSLLKNEW QTVATACIFL ASKIEDTPCQ
101: LGRVVTVAHE TMYKRKPDAA RRIKQKEVLE KRKDLILMGE ALLLSTIRFD FNIQHPYEPL NLALKNLGIS QKEVKQAAIN LINDTLRTTL VVQFKPHYIA
201: AGALHLAAKF HDVTLPSEQG KVWWHQFDVA PRQLQAAIQQ MKQVFNERNQ RPAGPAIGPI PAPAPVEKQQ AVRFPKPALV AKQQTLSLPK PAPVAKQQAL
301: SLLKPAPVEE QQAVSFPKPA PVAKQQTVSS QKPAPVEEHQ TVSSPKPAPL EPALVKKEQT ASSLKPAAEK QQTASSPKPA PAEKQQTVSS PKPAPVEKQQ
401: IISFPKPVLK YTYSRRGLRN TAAPTVTPTP TLVKKQQKIS TPDGPVSHAF SPRGVLNGPT SAPTITPNPM KKQQALSTLD SVLRQAHPSV GGVKRTRSPA
501: QDKALVKKQK IISAPNSVVR HARPSVVVVR PTGSPARART PVKKSQIISA QDSVPRHTRP SVGGERRPST APAPAPASAL ARKQPTISTP DSVMRHTDPS
601: RNEDSKPLRM HVDHSLSRTA KDGRLEKPSF QAALNADHGH HVGSRPKDVN MTRVPNLVGQ KRRIQETAGQ PPAPADRCAG DASRRPQLPS LIVAPPSWKK
701: QKIDV
101: LGRVVTVAHE TMYKRKPDAA RRIKQKEVLE KRKDLILMGE ALLLSTIRFD FNIQHPYEPL NLALKNLGIS QKEVKQAAIN LINDTLRTTL VVQFKPHYIA
201: AGALHLAAKF HDVTLPSEQG KVWWHQFDVA PRQLQAAIQQ MKQVFNERNQ RPAGPAIGPI PAPAPVEKQQ AVRFPKPALV AKQQTLSLPK PAPVAKQQAL
301: SLLKPAPVEE QQAVSFPKPA PVAKQQTVSS QKPAPVEEHQ TVSSPKPAPL EPALVKKEQT ASSLKPAAEK QQTASSPKPA PAEKQQTVSS PKPAPVEKQQ
401: IISFPKPVLK YTYSRRGLRN TAAPTVTPTP TLVKKQQKIS TPDGPVSHAF SPRGVLNGPT SAPTITPNPM KKQQALSTLD SVLRQAHPSV GGVKRTRSPA
501: QDKALVKKQK IISAPNSVVR HARPSVVVVR PTGSPARART PVKKSQIISA QDSVPRHTRP SVGGERRPST APAPAPASAL ARKQPTISTP DSVMRHTDPS
601: RNEDSKPLRM HVDHSLSRTA KDGRLEKPSF QAALNADHGH HVGSRPKDVN MTRVPNLVGQ KRRIQETAGQ PPAPADRCAG DASRRPQLPS LIVAPPSWKK
701: QKIDV
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.