Factsheet for Bra036354.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40984	Canola	nucleus	97.97	98.47
AT3G25990.1	Thale cress	cytosol	64.3	68.28
Bra026903.1-P	Field mustard	nucleus	65.32	64.18
Bra019721.1-P	Field mustard	nucleus	64.3	63.5
TraesCS2D01G343200.1	Wheat	nucleus	41.52	56.36
HORVU2Hr1G046270.1	Barley	cytosol	22.28	56.05
TraesCS2B01G363200.2	Wheat	nucleus	50.13	54.85
HORVU2Hr1G084030.2	Barley	cytosol	49.11	53.74
TraesCS2A01G320100.1	Wheat	nucleus	49.11	53.74
EES11021	Sorghum	nucleus	49.11	50.79
Zm00001d025720_P002	Maize	nucleus	48.1	50.13
GSMUA_Achr5P17240_001	Banana	nucleus	23.29	42.2
Bra000046.1-P	Field mustard	nucleus	16.71	22.45
Bra005127.1-P	Field mustard	nucleus	15.44	20.89
Bra005688.1-P	Field mustard	nucleus	12.91	17.83
Bra028899.1-P	Field mustard	nucleus	10.63	17.14

Protein Annotations

EnsemblPlants:Bra036354.1	EnsemblPlants:Bra036354.1-P	EnsemblPlantsGene:Bra036354	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002545B8C	UniProt:M4F5J8	MapMan:15.5.20	:	:	:

Description

AT3G25990 (E=5e-156) | DNA-binding protein GT-1-related

Coordinates

chrA02:+:22843275..22844960

Molecular Weight (calculated)

45195.9 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.840

Length

395 amino acids

Sequence
(BLAST)

001: MFVSSDKPRS PIDFYKDDDD NNNPSSPTSR HINMMIDGDL QPPPHHQHQI LLGDNSSSED HEINTKAPKK RAETWVQDET RILIALRREM DGLFNTSKSN
101: KHLWEEISSK MREKGFDRSP AMCTDKWRNL LKEFKKAAKD QQVSGKMSHY KEIEDLLRER SKKVTTSYKS VTAPSKVDSF MQFTDKGFED TGLSFASVEA
201: NGRPTLNLER QLDHEGHPLA IASADAVTAN GVPPWNWREP AGNGKSSDGQ PFVGKIITVK YGDYTRRVGI DGTAEAIKEA IRSAFRLRTR RAFWLEDEEE
301: VVRSLDRDMP LGNYTLHVDE GIAVRVCHYD ESDPLPVHQE EKVFYTEEDY RDFLGRRGWT CLGEFDGGFR NIESMVRNVD SMDDLQPGVL YRGMR

Best Arabidopsis Sequence Match ( AT3G25990.1 )
(BLAST)

001: MFVSDNNNPS RDINMMIGDV TSNGDLQPHQ IILGESSGGE DHEIIKAPKK RAETWAQDET RTLISLRREM DNLFNTSKSN KHLWEQISKK MREKGFDRSP
101: SMCTDKWRNI LKEFKKAKQH EDKATSGGST KMSYYNEIED IFRERKKKVA FYKSPATTTP SSAKVDSFMQ FTDKGFEDTG ISFTSVEANG RPTLNLETEL
201: DHDGLPLPIA ADPITANGVP PWNWRDTPGN GVDGQPFAGR IITVKFGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL EDEEQVIRSL DRDMPLGNYI
301: LRIDEGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF DAFQNIDNMD ELQSGRLYRG MR

Arabidopsis Description

GT-4Trihelix transcription factor GT-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.