Factsheet for VIT_14s0171g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g02420.t01	Wine grape	nucleus	68.25	69.73
GSMUA_Achr3P19370_001	Banana	nucleus	65.34	67.3
GSMUA_Achr5P17230_001	Banana	cytosol	34.13	62.62
HORVU2Hr1G046270.1	Barley	cytosol	25.93	62.42
HORVU2Hr1G084030.2	Barley	cytosol	56.08	58.73
TraesCS2B01G363200.2	Wheat	nucleus	56.08	58.73
TraesCS2A01G320100.1	Wheat	nucleus	55.29	57.89
TraesCS2D01G343200.1	Wheat	nucleus	44.44	57.73
EES11021	Sorghum	nucleus	52.91	52.36
Zm00001d025720_P002	Maize	nucleus	52.12	51.98
VIT_17s0000g10420.t01	Wine grape	nucleus	44.71	49.42
VIT_08s0105g00400.t01	Wine grape	nucleus	13.49	18.41
VIT_02s0087g00140.t01	Wine grape	nucleus	14.02	16.72

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100264546	wikigene:100264546	MapMan:15.5.20	ProteinID:CCB62237	ProteinID:CCB62237.1
UniProt:F6I5L9	EMBL:FN596749	GO:GO:0000981	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017877	EntrezGene:LOC100264546	wikigene:LOC100264546
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45169	InterPro:SANT/Myb	SMART:SM00717
TIGR:TC60417	UniParc:UPI00015C98B1	ArrayExpress:VIT_14s0171g00450	EnsemblPlantsGene:VIT_14s0171g00450	EnsemblPlants:VIT_14s0171g00450.t01	unigene:Vvi.771
RefSeq:XP_002266062	RefSeq:XP_002266062.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:26243810..26261912

Molecular Weight (calculated)

42765.3 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.758

Length

378 amino acids

Sequence
(BLAST)

001: MYLSEKARPI DFYKEGGGRE MMLEVVANNG LSPQQQQQQM ILAESSGEDH EMKAPKKRAE TWVQEETRNL ISFRREVDGL FNTSKSNKHL WEQISAKMRE
101: KGFDRSPTMC TDKWRNLLKE FKKAKHQDRS SSSGSAKMAY YKELEELLRD RSKNGSYKSP TPSKVDSYIQ FSDKGLEDAG IPFGSVEASG RSTVNLERPL
201: DHDGDPLAIT AADAVAASGV PPWNWRETPG NGGEGHSSYG GRVISVKWGE YTRRIGIDGN LGAIKDAIKS AFNLRTKRAF WLEDEDGVVR CLDRDMPLGN
301: YTLHLDEGVT IKVCLYDDPD RITVRTEEKT LYTEEDFRDF LARRGLIGLR ELTGYRSFHT LDDLHSGAMY QGVRLLGD

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.