Factsheet for GSMUA_Achr3P23200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
peroxisome 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P06060_001
GSMUA_Achr9P14520_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	GSMUA_Achr3P06060_001	AT1G24050.1	21798944
AT4G26990.1	GSMUA_Achr9P14520_001	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46146	Soybean	nucleus, plastid	39.26	18.47
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.0	12.19
Zm00001d002243_P004	Maize	mitochondrion	40.74	12.11
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	40.0	11.84
Os04t0625900-01	Rice	plastid	39.26	11.73
KRG98802	Soybean	nucleus	41.48	11.31
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	33.33	10.61
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	29.63	9.09
VIT_19s0090g00300.t01	Wine grape	nucleus	38.52	9.04
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	33.33	8.89
AT4G26990.1	Thale cress	plasma membrane	31.11	8.86
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	32.59	8.68
CDY46672	Canola	nucleus	27.41	8.39
Bra026388.1-P	Field mustard	nucleus	28.89	8.33
CDX89288	Canola	nucleus	28.15	8.15
CDY29262	Canola	nucleus	28.15	8.14
HORVU2Hr1G106820.1	Barley	cytosol	23.7	7.29
AT5G54920.2	Thale cress	plastid	28.15	7.28
GSMUA_Achr6P06300_001	Banana	mitochondrion	29.63	6.15
GSMUA_Achr7P11380_001	Banana	mitochondrion	28.89	6.13
KRH46148	Soybean	plastid	0.74	0.47
CDX92788	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr3P23200_001	EnsemblPlants:GSMUA_Achr3T23200_001	EnsemblPlantsGene:GSMUA_Achr3G23200_001	InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF12
PFAM:PF14438	UniParc:UPI000295F9E3	UniProt:M0SH36	MapMan:35.2	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G23200_001]

Coordinates

chr3:-:24012638..24013577

Molecular Weight (calculated)

14598.7 Da

IEP (calculated)

8.970

GRAVY (calculated)

-0.086

Length

135 amino acids

Sequence
(BLAST)

001: MPTAQPSSSS LIKARGRSGA FGKRRVKEAA RRFDEGMEPK KGVDESSLDE LFLYTTVCIV GFPVEVQVKD GSLYSGILHT ACFEKDQGIV LKKARKIGNG
101: KCDTNLALGD FVDTLVILSS DLVQVAVKVR SFPCG

Best Arabidopsis Sequence Match ( AT5G54920.1 )
(BLAST)

001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDENKYHP SSLNHQRQAG VRILKNSKKI
201: TDVHQEDNVE ARSSSCSLDN MSERVKPIEQ EKMPEPSSNG FHDATERPSS TENSSSQSTT VDENSEVSLV LVVSTNSLPP TQATDPDKKA KEFKLNPGAK
301: TFSPSLAKRL TSAHAGMTPV VANMGYVPSN TPMLPVPEAV QPEIGISPFL SHASSPSKFV PYTNLATGNA GGGSHFPQHM VGPTINRGQP HRFTTQYHSV
401: QPTPMLVNPN PQVMVGRSGQ LMYMQPISQD LVQGAPHNSH LPPRPLFTPQ QFQYPKHQSL IATGQPMHLY APQPFAANGH QPYTVMPTDI PVMQSPFPIN
501: RAMPIPVPNG FYGTKFL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.