Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
- plastid 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 79.87 | 66.15 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 69.18 | 65.87 |
| Os02t0741900-01 | Rice | cytosol | 69.18 | 60.77 |
| KRG99265 | Soybean | endoplasmic reticulum | 71.07 | 60.75 |
| TraesCS6D01G288600.1 | Wheat | cytosol | 68.55 | 60.22 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 68.55 | 60.22 |
| KRH45736 | Soybean | endoplasmic reticulum | 70.44 | 60.22 |
| CDY68732 | Canola | cytosol | 44.03 | 57.38 |
| EES05545 | Sorghum | cytosol | 65.41 | 57.14 |
| Solyc04g025670.2.1 | Tomato | plastid | 35.22 | 51.38 |
| Zm00001d052276_P005 | Maize | cytosol | 66.67 | 51.21 |
| AT1G24050.1 | Thale cress | cytosol | 51.57 | 43.62 |
| Bra012415.1-P | Field mustard | cytosol | 50.31 | 43.24 |
| CDY16248 | Canola | cytosol | 50.31 | 41.88 |
| CDY60798 | Canola | cytosol | 50.31 | 41.67 |
| HORVU6Hr1G076310.1 | Barley | plastid | 64.78 | 40.23 |
| CDY59944 | Canola | cytosol | 39.62 | 35.2 |
| CDY03760 | Canola | cytosol | 38.99 | 33.7 |
| Bra007903.1-P | Field mustard | cytosol | 38.36 | 33.15 |
| AT1G70220.1 | Thale cress | cytosol | 33.96 | 24.11 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P14520_001 | EnsemblPlants:GSMUA_Achr9T14520_001 | EnsemblPlantsGene:GSMUA_Achr9G14520_001 | InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 | PFAM:PF09793 |
| SEG:seg | SMART:SM00995 | UniParc:UPI000296B068 | UniProt:M0U0B0 | MapMan:35.2 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G14520_001]
Coordinates
chr9:-:9468924..9478848
Molecular Weight (calculated)
17876.4 Da
IEP (calculated)
9.047
GRAVY (calculated)
-0.325
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFLFLSDVS LFSIRFFDRS STQEGSSKAG PRRNIRLLKA NYIQDFTYLR KAEDPIDPNK CYIDLAGLQA REEASLRQAE IEAERIGVGV TSEAQSIFDA
101: LSKTLPVHWD KTVIVVMNEV RVSSPYLPEN VIGGTPAAND RVKKVLDFER KRLQVRGPG
101: LSKTLPVHWD KTVIVVMNEV RVSSPYLPEN VIGGTPAAND RVKKVLDFER KRLQVRGPG
001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
Arabidopsis Description
At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.