Factsheet for HORVU6Hr1G076310.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G027080.4
HORVU5Hr1G007830.6
HORVU6Hr1G062870.1
HORVU7Hr1G072420.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24050.1	HORVU5Hr1G007830.6	AT1G04290.1	21798944
AT1G24050.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT1G24050.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944
AT1G24050.1	HORVU7Hr1G072420.4	AT4G30330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G288600.1	Wheat	cytosol	57.81	81.77
TraesCS6B01G338900.1	Wheat	cytosol	57.81	81.77
Os02t0741900-01	Rice	cytosol	55.47	78.45
EES05545	Sorghum	cytosol	51.95	73.08
GSMUA_Achr9P14520_001	Banana	plastid	40.23	64.78
Zm00001d052276_P005	Maize	cytosol	51.17	63.28
VIT_01s0026g00750.t01	Wine grape	cytosol	40.23	61.68
CDY68732	Canola	cytosol	26.17	54.92
GSMUA_Achr3P06060_001	Banana	cytosol, peroxisome, plastid	39.84	53.12
KRG99265	Soybean	endoplasmic reticulum	36.33	50.0
KRH45736	Soybean	endoplasmic reticulum	35.94	49.46
Solyc04g025670.2.1	Tomato	plastid	19.92	46.79
Bra012415.1-P	Field mustard	cytosol	29.69	41.08
AT1G24050.1	Thale cress	cytosol	30.08	40.96
CDY60798	Canola	cytosol	29.69	39.58
CDY16248	Canola	cytosol	29.3	39.27
CDY59944	Canola	cytosol	24.22	34.64
CDY03760	Canola	cytosol	23.44	32.61
Bra007903.1-P	Field mustard	cytosol	23.44	32.61
AT1G70220.1	Thale cress	cytosol	21.48	24.55

Protein Annotations

EnsemblPlants:HORVU6Hr1G076310.1	EnsemblPlantsGene:HORVU6Hr1G076310	InterPro:Anticodon-binding_dom	PANTHER:PTHR13542	PFAM:PF09793	SEG:seg
SMART:SM00995	UniParc:UPI000B45FE37	UniProt:A0A287UR87	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr6H:+:525326174..525332123

Molecular Weight (calculated)

29004.8 Da

IEP (calculated)

11.679

GRAVY (calculated)

-0.872

Length

256 amino acids

Sequence
(BLAST)

001: MPPCMGLQRQ AHIHKKALRT GRSLFRIPTF FFTGTRISPQ NLPDSETPRR HSSAPPSRTS LRPPPPTHRR RRRHGGRRRG VRGRRGDLRE DHPRGGVRGP
101: DRLLRPPEQP PRHPSQEGVG RAERGERRNV RVLKANYIQE FSVVGKYDDP LDPAGCVLDL AAIHAREEAA LRQAEIEAER IGVGVTPEAQ RLFDALSKTL
201: PVHWDKTDIV VMKEVRVCSP YLPENVSGGT SAANERVKKV LDFERKRQHV RVPGQF

Best Arabidopsis Sequence Match ( AT1G24050.1 )
(BLAST)

001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT

Arabidopsis Description

At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.