CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02922
KRH18975
KRH24006
KRH27971
KRH29310
KRH53956
KRH63916
KRH63917
KRH63981
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24050.1	KRH63916	AT1G04290.1	21798944
AT1G24050.1	KRH63917	AT1G04290.1	21798944
AT1G24050.1	KRH24006	AT3G48150.1	21798944
AT1G24050.1	KRH27971	AT3G48150.1	21798944
AT1G24050.1	KRH29310	AT3G48150.1	21798944
AT1G24050.1	KRH77487	AT3G48150.1	21798944
AT1G24050.1	KRH02922	AT4G30330.1	21798944
AT1G24050.1	KRH18975	AT4G30330.1	21798944
AT1G24050.1	KRH53956	AT4G30330.1	21798944
AT1G24050.1	KRH63981	AT4G30330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99265	Soybean	endoplasmic reticulum	98.39	98.39
GSMUA_Achr9P14520_001	Banana	plastid	60.22	70.44
GSMUA_Achr3P06060_001	Banana	cytosol, peroxisome, plastid	69.35	67.19
VIT_01s0026g00750.t01	Wine grape	cytosol	59.14	65.87
Os02t0741900-01	Rice	cytosol	61.83	63.54
TraesCS6D01G288600.1	Wheat	cytosol	60.75	62.43
TraesCS6B01G338900.1	Wheat	cytosol	60.75	62.43
EES05545	Sorghum	cytosol	60.75	62.09
CDY68732	Canola	cytosol	38.71	59.02
Solyc04g025670.2.1	Tomato	plastid	32.26	55.05
Zm00001d052276_P005	Maize	cytosol	60.75	54.59
Bra012415.1-P	Field mustard	cytosol	50.54	50.81
AT1G24050.1	Thale cress	cytosol	51.08	50.53
CDY60798	Canola	cytosol	50.54	48.96
CDY16248	Canola	cytosol	48.92	47.64
CDY03760	Canola	cytosol	41.4	41.85
CDY59944	Canola	cytosol	39.78	41.34
Bra007903.1-P	Field mustard	cytosol	40.86	41.3
HORVU6Hr1G076310.1	Barley	plastid	49.46	35.94
AT1G70220.1	Thale cress	cytosol	38.17	31.7

Protein Annotations

EMBL:ACUP02005281	EnsemblPlants:KRH45736	EnsemblPlantsGene:GLYMA_08G290400	EntrezGene:100499950	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Anticodon-binding_dom	PANTHER:PTHR13542	PFAM:PF09793	ProteinID:KRH45736	ProteinID:KRH45736.1
SMART:SM00995	UniParc:UPI0001BA8A7C	UniProt:I1KXJ7	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:+:40376407..40380150

Molecular Weight (calculated)

20524.3 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.373

Length

186 amino acids

Sequence
(BLAST)

001: MEGGNNSSIN SNPEELAVGC LLSIRTTLGD EFEGQVVTFD RPSNILVLQE PSKPSPRRNL RLLKANYIKD FTFLGHAQDP LDPNTCFLDL TALQQREDVA
101: VRQAEADAER IGVGVTSEAQ SIFDALSKTL PVRWDKTVIV VMNEVRVSSP YHSESVVGGT PAANDRVKKV LEFERKRLQL RSSGGQ

Best Arabidopsis Sequence Match ( AT1G24050.1 )
(BLAST)

001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT

Arabidopsis Description

At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.