Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G288600.1 | Wheat | cytosol | 100.0 | 100.0 |
| Os02t0741900-01 | Rice | cytosol | 93.37 | 93.37 |
| EES05545 | Sorghum | cytosol | 89.5 | 89.01 |
| Zm00001d052276_P005 | Maize | cytosol | 88.4 | 77.29 |
| GSMUA_Achr9P14520_001 | Banana | plastid | 60.22 | 68.55 |
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 69.06 | 65.1 |
| KRG99265 | Soybean | endoplasmic reticulum | 62.98 | 61.29 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 56.35 | 61.08 |
| KRH45736 | Soybean | endoplasmic reticulum | 62.43 | 60.75 |
| HORVU6Hr1G076310.1 | Barley | plastid | 81.77 | 57.81 |
| CDY68732 | Canola | cytosol | 37.02 | 54.92 |
| Solyc04g025670.2.1 | Tomato | plastid | 29.83 | 49.54 |
| AT1G24050.1 | Thale cress | cytosol | 48.07 | 46.28 |
| Bra012415.1-P | Field mustard | cytosol | 46.41 | 45.41 |
| CDY60798 | Canola | cytosol | 48.07 | 45.31 |
| CDY16248 | Canola | cytosol | 47.51 | 45.03 |
| CDY59944 | Canola | cytosol | 39.78 | 40.22 |
| CDY03760 | Canola | cytosol | 38.12 | 37.5 |
| Bra007903.1-P | Field mustard | cytosol | 38.12 | 37.5 |
| AT1G70220.1 | Thale cress | cytosol | 34.25 | 27.68 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G338900.1 | EnsemblPlantsGene:TraesCS6B01G338900 | InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 | PFAM:PF09793 | SEG:seg |
| SMART:SM00995 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:597075557..597081457
Molecular Weight (calculated)
20015.9 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.257
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGGEEFAV GVVISAKTTL GEEFEGQIVS FDRPSNLLVI QEGVGRAERG ERRNVRVLKA NYIQEFSVVG KYDDPLDPAG CVLDLAAIHA REEAALRQAE
101: IEAERIGVGV TPEAQRLFDA LSKTLPVHWD KTDIVVMKEV RVCSPYLPEN VSGGTSAANE RVKKVLDFER KRQHVRVPGQ F
101: IEAERIGVGV TPEAQRLFDA LSKTLPVHWD KTDIVVMKEV RVCSPYLPEN VSGGTSAANE RVKKVLDFER KRQHVRVPGQ F
001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
Arabidopsis Description
At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.