Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60798 | Canola | cytosol | 96.34 | 95.83 |
| CDY68732 | Canola | cytosol | 57.07 | 89.34 |
| AT1G24050.1 | Thale cress | cytosol | 85.86 | 87.23 |
| CDY59944 | Canola | cytosol | 48.17 | 51.4 |
| GSMUA_Achr9P14520_001 | Banana | plastid | 41.88 | 50.31 |
| Os02t0741900-01 | Rice | cytosol | 47.12 | 49.72 |
| CDY03760 | Canola | cytosol | 47.64 | 49.46 |
| KRH45736 | Soybean | endoplasmic reticulum | 47.64 | 48.92 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 42.41 | 48.5 |
| KRG99265 | Soybean | endoplasmic reticulum | 46.6 | 47.85 |
| EES05545 | Sorghum | cytosol | 45.55 | 47.8 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 45.03 | 47.51 |
| TraesCS6D01G288600.1 | Wheat | cytosol | 45.03 | 47.51 |
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 47.12 | 46.88 |
| Zm00001d052276_P005 | Maize | cytosol | 47.64 | 43.96 |
| Solyc04g025670.2.1 | Tomato | plastid | 22.51 | 39.45 |
| HORVU6Hr1G076310.1 | Barley | plastid | 39.27 | 29.3 |
Protein Annotations
| EnsemblPlants:CDY16248 | EnsemblPlantsGene:GSBRNA2T00090713001 | InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 | PFAM:PF09793 | ProteinID:CDY16248 |
| ProteinID:CDY16248.1 | SEG:seg | SMART:SM00995 | UniParc:UPI0004EEAD5F | UniProt:A0A078FV15 | MapMan:35.2 |
Description
BnaA09g29820DBnaA09g29820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV15]
Coordinates
chrLK032061:-:735162..736874
Molecular Weight (calculated)
20657.7 Da
IEP (calculated)
5.357
GRAVY (calculated)
-0.109
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPAGASVAN DIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVI GFCSQEGSKP RAGHSKNTRM VNASFITGLS YLGKTEDPLL TDNCCVNLDS
101: LRAKEALAIR QAEAEAERLG VGVTAEAQSI FDSLSKTLPV QWENSDILVM KEVRVRSPYL SDCVFGGTDA ANNRVKKVLE LVRRRLQLVG T
101: LRAKEALAIR QAEAEAERLG VGVTAEAQSI FDSLSKTLPV QWENSDILVM KEVRVRSPYL SDCVFGGTDA ANNRVKKVLE LVRRRLQLVG T
001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
Arabidopsis Description
At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.