Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P14520_001 | Banana | plastid | 66.15 | 79.87 |
| KRH45736 | Soybean | endoplasmic reticulum | 67.19 | 69.35 |
| TraesCS6D01G288600.1 | Wheat | cytosol | 65.1 | 69.06 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 65.1 | 69.06 |
| KRG99265 | Soybean | endoplasmic reticulum | 66.67 | 68.82 |
| Os02t0741900-01 | Rice | cytosol | 64.58 | 68.51 |
| EES05545 | Sorghum | cytosol | 63.02 | 66.48 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 55.73 | 64.07 |
| Zm00001d052276_P005 | Maize | cytosol | 63.54 | 58.94 |
| CDY68732 | Canola | cytosol | 35.94 | 56.56 |
| Solyc04g025670.2.1 | Tomato | plastid | 30.73 | 54.13 |
| AT1G24050.1 | Thale cress | cytosol | 47.4 | 48.4 |
| Bra012415.1-P | Field mustard | cytosol | 46.35 | 48.11 |
| CDY16248 | Canola | cytosol | 46.88 | 47.12 |
| CDY60798 | Canola | cytosol | 46.88 | 46.88 |
| CDY59944 | Canola | cytosol | 38.54 | 41.34 |
| HORVU6Hr1G076310.1 | Barley | plastid | 53.12 | 39.84 |
| CDY03760 | Canola | cytosol | 38.02 | 39.67 |
| Bra007903.1-P | Field mustard | cytosol | 36.98 | 38.59 |
| AT1G70220.1 | Thale cress | cytosol | 32.29 | 27.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P06060_001 | EnsemblPlants:GSMUA_Achr3T06060_001 | EnsemblPlantsGene:GSMUA_Achr3G06060_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 | PFAM:PF09793 | SEG:seg | SMART:SM00995 | TMHMM:TMhelix |
| UniParc:UPI000295F023 | UniProt:M0SC74 | MapMan:35.2 | : | : | : |
Description
Putative Protein LSM12 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G06060_001]
Coordinates
chr3:-:4090785..4093618
Molecular Weight (calculated)
21465.9 Da
IEP (calculated)
5.404
GRAVY (calculated)
-0.055
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGGEELA VGCVLSLRTT LGDEIEGQIV AYDRPSNILV IHILLALFDR IFFFFFFSNA GARRNIRLLK ANYIQDFTYL KKAEDPLDLN KCYIDLAGLQ
101: AREEASLRQA EIEAERIGVG VTSEAQSLFD ALSKTLPVRW DKTVIVVMNE VRVSIPYLPE NVTGGTPAAN DRVKKVLEFE RKRLQARGPG QF
101: AREEASLRQA EIEAERIGVG VTSEAQSLFD ALSKTLPVRW DKTVIVVMNE VRVSIPYLPE NVTGGTPAAN DRVKKVLEFE RKRLQARGPG QF
001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
Arabidopsis Description
At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.