Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03760 | Canola | cytosol | 98.91 | 98.91 |
| Bra012415.1-P | Field mustard | cytosol | 48.37 | 48.11 |
| AT1G70220.1 | Thale cress | cytosol | 51.63 | 42.41 |
| KRG99265 | Soybean | endoplasmic reticulum | 41.3 | 40.86 |
| KRH45736 | Soybean | endoplasmic reticulum | 41.3 | 40.86 |
| Os02t0741900-01 | Rice | cytosol | 38.59 | 39.23 |
| GSMUA_Achr9P14520_001 | Banana | plastid | 33.15 | 38.36 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 37.5 | 38.12 |
| TraesCS6D01G288600.1 | Wheat | cytosol | 37.5 | 38.12 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 34.24 | 37.72 |
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 38.59 | 36.98 |
| EES05545 | Sorghum | cytosol | 36.41 | 36.81 |
| Solyc04g025670.2.1 | Tomato | plastid | 19.57 | 33.03 |
| Zm00001d052276_P005 | Maize | cytosol | 35.87 | 31.88 |
| HORVU6Hr1G076310.1 | Barley | plastid | 32.61 | 23.44 |
Protein Annotations
| EnsemblPlants:Bra007903.1 | EnsemblPlants:Bra007903.1-P | EnsemblPlantsGene:Bra007903 | InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 | PFAM:PF09793 |
| SEG:seg | SMART:SM00995 | UniParc:UPI000254688E | UniProt:M4CUK8 | MapMan:35.2 | : |
Description
AT1G24050 (E=4e-035) | unknown protein
Coordinates
chrA02:-:11734195..11735537
Molecular Weight (calculated)
19972.0 Da
IEP (calculated)
9.175
GRAVY (calculated)
-0.374
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPANATATK AGGGGSGDEY EVGKTYEVKL TTGNEFKGIV LSYDSDPHVG AIPGKCKSMM TTRTVNASFI SKANLIGKCK DPLDWKKKKC FVDLSGLLEK
101: EAIAIRRIES IGVGVTAEGQ KIFDALSKTL HVKWENKDMV IMEDVRICSP YHSDSVTGGT RAANDRIKKV LNNVREKLQL SSDT
101: EAIAIRRIES IGVGVTAEGQ KIFDALSKTL HVKWENKDMV IMEDVRICSP YHSDSVTGGT RAANDRIKKV LNNVREKLQL SSDT
001: MKPASATVAK VDSGGEDEKF EVGKVYAVKL TTGDQFNGIV LAYDSEPNFA VFEEGTKPKP LDSKSLRMVN VNYITEMKNL GRVKERLAKN TLVNLDGLIE
101: KENHAISNVE KIGFGVTAEG QMIFDAISKT LPIRWVNKEM LVMGDVFIRS PYHSDCVYGG PRMVNERVKH VLGQERKKLQ LSDT
101: KENHAISNVE KIGFGVTAEG QMIFDAISKT LPIRWVNKEM LVMGDVFIRS PYHSDCVYGG PRMVNERVKH VLGQERKKLQ LSDT
Arabidopsis Description
RNA-processing, Lsm domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.