Factsheet for Solyc04g025670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
endoplasmic reticulum 2
extracellular 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g098470.2.1
Solyc03g113740.2.1
Solyc06g072280.2.1
Solyc09g005390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24050.1	Solyc09g005390.2.1	AT1G04290.1	21798944
AT1G24050.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT1G24050.1	Solyc03g098470.2.1	AT4G30330.1	21798944
AT1G24050.1	Solyc06g072280.2.1	AT4G30330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g00750.t01	Wine grape	cytosol	54.13	35.33
GSMUA_Achr9P14520_001	Banana	plastid	51.38	35.22
CDY68732	Canola	cytosol	36.7	32.79
KRH45736	Soybean	endoplasmic reticulum	55.05	32.26
KRG99265	Soybean	endoplasmic reticulum	54.13	31.72
GSMUA_Achr3P06060_001	Banana	cytosol, peroxisome, plastid	54.13	30.73
EES05545	Sorghum	cytosol	50.46	30.22
TraesCS6D01G288600.1	Wheat	cytosol	49.54	29.83
TraesCS6B01G338900.1	Wheat	cytosol	49.54	29.83
Os02t0741900-01	Rice	cytosol	48.62	29.28
Zm00001d052276_P005	Maize	cytosol	50.46	26.57
Bra012415.1-P	Field mustard	cytosol	41.28	24.32
AT1G24050.1	Thale cress	cytosol	41.28	23.94
CDY16248	Canola	cytosol	39.45	22.51
CDY60798	Canola	cytosol	39.45	22.4
HORVU6Hr1G076310.1	Barley	plastid	46.79	19.92
CDY03760	Canola	cytosol	33.03	19.57
Bra007903.1-P	Field mustard	cytosol	33.03	19.57
CDY59944	Canola	cytosol	32.11	19.55
AT1G70220.1	Thale cress	cytosol	30.28	14.73

Protein Annotations

EnsemblPlants:Solyc04g025670.2.1	EnsemblPlantsGene:Solyc04g025670.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Anticodon-binding_dom
PANTHER:PTHR13542	PFAM:PF09793	TMHMM:TMhelix	UniParc:UPI0002765C2B	UniProt:K4BR11	MapMan:35.2

Description

No Description!

Coordinates

chr4:+:21347948..21350227

Molecular Weight (calculated)

12517.5 Da

IEP (calculated)

11.418

GRAVY (calculated)

0.165

Length

109 amino acids

Sequence
(BLAST)

001: MGTVFLSSRF SHWILGSLAP PYFFIAMLRI CRIPVLVTRI FYVKFDVTVH VTRLPVRWDK TVIVVMNEVR VSSPYLPESV AGGTPAANER VRKVLELERK
101: RLQSRNTGQ

Best Arabidopsis Sequence Match ( AT1G24050.1 )
(BLAST)

001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT

Arabidopsis Description

At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.