CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86643
CDX89829
CDY15497
CDY18217
CDY36901
CDY44976
CDY58069
CDY58070
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G24050.1	CDX86643	AT1G04290.1	21798944
AT1G24050.1	CDX89829	AT1G04290.1	21798944
AT1G24050.1	CDY15497	AT1G04290.1	21798944
AT1G24050.1	CDY18217	AT1G04290.1	21798944
AT1G24050.1	CDY36901	AT3G48150.1	21798944
AT1G24050.1	CDY44976	AT3G48150.1	21798944
AT1G24050.1	CDY58069	AT3G48150.1	21798944
AT1G24050.1	CDY58070	AT3G48150.1	21798944
AT1G24050.1	CDY70805	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16248	Canola	cytosol	95.83	96.34
CDY68732	Canola	cytosol	56.25	88.52
AT1G24050.1	Thale cress	cytosol	84.38	86.17
KRH45736	Soybean	endoplasmic reticulum	48.96	50.54
GSMUA_Achr9P14520_001	Banana	plastid	41.67	50.31
CDY59944	Canola	cytosol	46.88	50.28
Os02t0741900-01	Rice	cytosol	47.4	50.28
VIT_01s0026g00750.t01	Wine grape	cytosol	43.23	49.7
KRG99265	Soybean	endoplasmic reticulum	47.92	49.46
CDY03760	Canola	cytosol	46.35	48.37
EES05545	Sorghum	cytosol	45.83	48.35
TraesCS6B01G338900.1	Wheat	cytosol	45.31	48.07
TraesCS6D01G288600.1	Wheat	cytosol	45.31	48.07
GSMUA_Achr3P06060_001	Banana	cytosol, peroxisome, plastid	46.88	46.88
Zm00001d052276_P005	Maize	cytosol	47.92	44.44
Solyc04g025670.2.1	Tomato	plastid	22.4	39.45
HORVU6Hr1G076310.1	Barley	plastid	39.58	29.69

Protein Annotations

EnsemblPlants:CDY60798	EnsemblPlantsGene:GSBRNA2T00030088001	InterPro:Anticodon-binding_dom	PANTHER:PTHR13542	PFAM:PF09793	ProteinID:CDY60798
ProteinID:CDY60798.1	SEG:seg	SMART:SM00995	UniParc:UPI0004EEBFFD	UniProt:A0A078J772	MapMan:35.2

Description

BnaC05g50800DBnaC05g50800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J772]

Coordinates

chrLK033916:-:21401..23167

Molecular Weight (calculated)

20698.8 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.142

Length

192 amino acids

Sequence
(BLAST)

001: MDPAGASVAN DIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPVPNFVI GFGSQEGSKP RAGHSKNTRM VNASFITGLS YLGKTEDPLL TDNCCLNLDS
101: LRAKEALAIS RQAEADAERL GVGVTAEAQS IYDALSKTLP VQWEKSDILV MKEVRVRSPY LSDCVFGGTD AANNRVKKVL ELVRRRLQLV GT

Best Arabidopsis Sequence Match ( AT1G24050.1 )
(BLAST)

001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT

Arabidopsis Description

At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.