Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05545 | Sorghum | cytosol | 85.02 | 96.7 |
| Os02t0741900-01 | Rice | cytosol | 78.26 | 89.5 |
| TraesCS6D01G288600.1 | Wheat | cytosol | 77.29 | 88.4 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 77.29 | 88.4 |
| GSMUA_Achr9P14520_001 | Banana | plastid | 51.21 | 66.67 |
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 58.94 | 63.54 |
| KRG99265 | Soybean | endoplasmic reticulum | 55.07 | 61.29 |
| KRH45736 | Soybean | endoplasmic reticulum | 54.59 | 60.75 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 48.79 | 60.48 |
| CDY68732 | Canola | cytosol | 34.3 | 58.2 |
| HORVU6Hr1G076310.1 | Barley | plastid | 63.28 | 51.17 |
| Solyc04g025670.2.1 | Tomato | plastid | 26.57 | 50.46 |
| AT1G24050.1 | Thale cress | cytosol | 43.96 | 48.4 |
| Bra012415.1-P | Field mustard | cytosol | 43.0 | 48.11 |
| CDY60798 | Canola | cytosol | 44.44 | 47.92 |
| CDY16248 | Canola | cytosol | 43.96 | 47.64 |
| CDY59944 | Canola | cytosol | 34.78 | 40.22 |
| CDY03760 | Canola | cytosol | 32.85 | 36.96 |
| Bra007903.1-P | Field mustard | cytosol | 31.88 | 35.87 |
| AT1G70220.1 | Thale cress | cytosol | 31.88 | 29.46 |
Protein Annotations
| EnsemblPlants:Zm00001d052276_P005 | EnsemblPlants:Zm00001d052276_T005 | EnsemblPlantsGene:Zm00001d052276 | InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 | PFAM:PF09793 |
| ProteinID:AQK56608.1 | SEG:seg | SMART:SM00995 | UniParc:UPI0008437334 | UniProt:A0A1D6QER2 | MapMan:35.2 |
Description
RNA-processing Lsm domain
Coordinates
chr4:+:185636356..185645200
Molecular Weight (calculated)
22981.6 Da
IEP (calculated)
7.419
GRAVY (calculated)
-0.214
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAGGEEFAI GVVISAKTTL GEEFEGQIVA FDRPSNLLVI HILRKSLMLV TRISLSFTYR SGCLSQEGVG RAERGERRNV RVLKANYIRE FSVVSKGDDP
101: LDPASCMLDL NSIYAREDAA LRQAEIEAER IGVGVTPEAQ SIFDALSKTL PVQWDKTDIV VMKEVRVRSP YLPENVNGGT AAANERVKKV IDFERKRLHS
201: RVPGQFS
101: LDPASCMLDL NSIYAREDAA LRQAEIEAER IGVGVTPEAQ SIFDALSKTL PVQWDKTDIV VMKEVRVRSP YLPENVNGGT AAANERVKKV IDFERKRLHS
201: RVPGQFS
001: MKPASATVAK VDSGGEDEKF EVGKVYAVKL TTGDQFNGIV LAYDSEPNFA VFDILFRNRY SQLVDSYLCY FAFLISSSCV CFRVFLDGLV ILQEGTKPKP
101: LDSKSLRMVN VNYITEMKNL GRVKERLAKN TLVNLDGLIE KENHAISNVE KIGFGVTAEG QMIFDAISKT LPIRWVNKEM LVMGDVFIRS PYHSDCVYGG
201: PRMVNERVKH VLGQERKKLQ LSDT
101: LDSKSLRMVN VNYITEMKNL GRVKERLAKN TLVNLDGLIE KENHAISNVE KIGFGVTAEG QMIFDAISKT LPIRWVNKEM LVMGDVFIRS PYHSDCVYGG
201: PRMVNERVKH VLGQERKKLQ LSDT
Arabidopsis Description
RNA-processing, Lsm domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.