Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007903.1-P | Field mustard | cytosol | 42.41 | 51.63 |
| CDY03760 | Canola | cytosol | 42.41 | 51.63 |
| AT1G24050.1 | Thale cress | cytosol | 43.3 | 51.6 |
| CDY59944 | Canola | cytosol | 40.18 | 50.28 |
| KRG99265 | Soybean | endoplasmic reticulum | 32.14 | 38.71 |
| KRH45736 | Soybean | endoplasmic reticulum | 31.7 | 38.17 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 26.79 | 35.93 |
| Os02t0741900-01 | Rice | cytosol | 28.12 | 34.81 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 27.68 | 34.25 |
| TraesCS6D01G288600.1 | Wheat | cytosol | 27.68 | 34.25 |
| GSMUA_Achr9P14520_001 | Banana | plastid | 24.11 | 33.96 |
| EES05545 | Sorghum | cytosol | 27.23 | 33.52 |
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 27.68 | 32.29 |
| Zm00001d052276_P005 | Maize | cytosol | 29.46 | 31.88 |
| Solyc04g025670.2.1 | Tomato | plastid | 14.73 | 30.28 |
| HORVU6Hr1G076310.1 | Barley | plastid | 24.55 | 21.48 |
Protein Annotations
| MapMan:35.2 | EntrezGene:843358 | ProteinID:AEE35035.1 | ArrayExpress:AT1G70220 | EnsemblPlantsGene:AT1G70220 | RefSeq:AT1G70220 |
| TAIR:AT1G70220 | RefSeq:AT1G70220-TAIR-G | EnsemblPlants:AT1G70220.1 | TAIR:AT1G70220.1 | InterPro:Anticodon-binding_dom | Unigene:At.52461 |
| UniProt:F4I5D2 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_177179.2 |
| PFAM:PF09793 | PO:PO:0000293 | PANTHER:PTHR13542 | SMART:SM00995 | TMHMM:TMhelix | UniParc:UPI00017390BC |
Description
RNA-processing, Lsm domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D2]
Coordinates
chr1:-:26446109..26448058
Molecular Weight (calculated)
25190.6 Da
IEP (calculated)
8.295
GRAVY (calculated)
-0.101
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPASATVAK VDSGGEDEKF EVGKVYAVKL TTGDQFNGIV LAYDSEPNFA VFDILFRNRY SQLVDSYLCY FAFLISSSCV CFRVFLDGLV ILQEGTKPKP
101: LDSKSLRMVN VNYITEMKNL GRVKERLAKN TLVNLDGLIE KENHAISNVE KIGFGVTAEG QMIFDAISKT LPIRWVNKEM LVMGDVFIRS PYHSDCVYGG
201: PRMVNERVKH VLGQERKKLQ LSDT
101: LDSKSLRMVN VNYITEMKNL GRVKERLAKN TLVNLDGLIE KENHAISNVE KIGFGVTAEG QMIFDAISKT LPIRWVNKEM LVMGDVFIRS PYHSDCVYGG
201: PRMVNERVKH VLGQERKKLQ LSDT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.