Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0126700-01 | |
| Os02t0656300-01 | |
| Os06t0679100-00 | |
| Os08t0151400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G24050.1 | Os02t0656300-01 | AT3G48150.1 | 21798944 |
| AT1G24050.1 | Os06t0679100-00 | AT3G48150.1 | 21798944 |
| AT1G24050.1 | Os02t0126700-01 | AT4G30330.1 | 21798944 |
| AT1G24050.1 | Os08t0151400-01 | AT4G30330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G288600.1 | Wheat | cytosol | 93.37 | 93.37 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 93.37 | 93.37 |
| EES05545 | Sorghum | cytosol | 90.61 | 90.11 |
| Zm00001d052276_P005 | Maize | cytosol | 89.5 | 78.26 |
| GSMUA_Achr9P14520_001 | Banana | plastid | 60.77 | 69.18 |
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 68.51 | 64.58 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 58.01 | 62.87 |
| KRG99265 | Soybean | endoplasmic reticulum | 64.09 | 62.37 |
| KRH45736 | Soybean | endoplasmic reticulum | 63.54 | 61.83 |
| CDY68732 | Canola | cytosol | 38.67 | 57.38 |
| HORVU6Hr1G076310.1 | Barley | plastid | 78.45 | 55.47 |
| Solyc04g025670.2.1 | Tomato | plastid | 29.28 | 48.62 |
| AT1G24050.1 | Thale cress | cytosol | 50.28 | 48.4 |
| Bra012415.1-P | Field mustard | cytosol | 48.62 | 47.57 |
| CDY60798 | Canola | cytosol | 50.28 | 47.4 |
| CDY16248 | Canola | cytosol | 49.72 | 47.12 |
| CDY59944 | Canola | cytosol | 40.88 | 41.34 |
| CDY03760 | Canola | cytosol | 39.23 | 38.59 |
| Bra007903.1-P | Field mustard | cytosol | 39.23 | 38.59 |
| AT1G70220.1 | Thale cress | cytosol | 34.81 | 28.12 |
Protein Annotations
| EMBL:AK068461 | EnsemblPlants:Os02t0741900-01 | EnsemblPlantsGene:Os02g0741900 | EntrezGene:4330690 | InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 |
| PFAM:PF09793 | ProteinID:BAD15729.1 | ProteinID:BAD15772.1 | ProteinID:BAS80856.1 | RefSeq:XP_015622924.1 | SEG:seg |
| SMART:SM00995 | UniParc:UPI0000358B52 | UniProt:Q6Z7R6 | MapMan:35.2 | : | : |
Description
Similar to T23E23.20. (Os02t0741900-01)
Coordinates
chr2:-:31055464..31059229
Molecular Weight (calculated)
19913.9 Da
IEP (calculated)
4.980
GRAVY (calculated)
-0.209
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGEEFAI GVLISVKTTL GEEFEGQIVS FDRPTNLLVI QEGVGRAERG ERRNVRVLKA NYIREFSVVG KADDPLDPAG CVLDLAAIHA REEAALRQAE
101: IEAERIGVGV TPEAQSIFDA LSKTLPVQWD KTDIVVMKEV RVCNPYLPEN VSGGTSAANE RVKKVLDFER KRLHVRVPGQ F
101: IEAERIGVGV TPEAQSIFDA LSKTLPVQWD KTDIVVMKEV RVCNPYLPEN VSGGTSAANE RVKKVLDFER KRLHVRVPGQ F
001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
Arabidopsis Description
At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.