Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra015301.1-P | |
| Bra018081.1-P | |
| Bra030563.1-P | |
| Bra033769.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G24050.1 | Bra015301.1-P | AT1G04290.1 | 21798944 |
| AT1G24050.1 | Bra030563.1-P | AT1G04290.1 | 21798944 |
| AT1G24050.1 | Bra018081.1-P | AT3G48150.1 | 21798944 |
| AT1G24050.1 | Bra033769.1-P | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68732 | Canola | cytosol | 63.78 | 96.72 |
| AT1G24050.1 | Thale cress | cytosol | 84.86 | 83.51 |
| KRH45736 | Soybean | endoplasmic reticulum | 50.81 | 50.54 |
| GSMUA_Achr9P14520_001 | Banana | plastid | 43.24 | 50.31 |
| KRG99265 | Soybean | endoplasmic reticulum | 49.73 | 49.46 |
| Os02t0741900-01 | Rice | cytosol | 47.57 | 48.62 |
| VIT_01s0026g00750.t01 | Wine grape | cytosol | 43.78 | 48.5 |
| Bra007903.1-P | Field mustard | cytosol | 48.11 | 48.37 |
| EES05545 | Sorghum | cytosol | 46.49 | 47.25 |
| TraesCS6B01G338900.1 | Wheat | cytosol | 45.41 | 46.41 |
| TraesCS6D01G288600.1 | Wheat | cytosol | 45.41 | 46.41 |
| GSMUA_Achr3P06060_001 | Banana | cytosol, peroxisome, plastid | 48.11 | 46.35 |
| Zm00001d052276_P005 | Maize | cytosol | 48.11 | 43.0 |
| Solyc04g025670.2.1 | Tomato | plastid | 24.32 | 41.28 |
| HORVU6Hr1G076310.1 | Barley | plastid | 41.08 | 29.69 |
Protein Annotations
| EnsemblPlants:Bra012415.1 | EnsemblPlants:Bra012415.1-P | EnsemblPlantsGene:Bra012415 | InterPro:Anticodon-binding_dom | PANTHER:PTHR13542 | PFAM:PF09793 |
| SMART:SM00995 | UniParc:UPI0002540B9A | UniProt:M4D7F5 | MapMan:35.2 | : | : |
Description
AT1G24050 (E=3e-089) | unknown protein
Coordinates
chrA07:-:7817895..7819336
Molecular Weight (calculated)
20111.1 Da
IEP (calculated)
8.193
GRAVY (calculated)
-0.212
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPAGASVAN AIGGSEGEKF AKGNIYSVKL ITGDEFRGIV MAYDPIPNFV GSKPRPGHSK NTRMVNASFI TGLSYLGKTE EPLLTDSCWV NLDGLRAKEA
101: LAVRQAEADA ERMGVGVTAE AQSIFDALSK TLPVQWEKSD ILVMKEVRVR SPYLSDCVFG GTDAANNRVK KVLELERRRL QLFGT
101: LAVRQAEADA ERMGVGVTAE AQSIFDALSK TLPVQWEKSD ILVMKEVRVR SPYLSDCVFG GTDAANNRVK KVLELERRRL QLFGT
001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
Arabidopsis Description
At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.