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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 4
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_07s0031g02330.t01
VIT_07s0130g00140.t01
VIT_07s0130g00150.t01
VIT_07s0130g00490.t01
VIT_17s0000g03570.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G24050.1 VIT_07s0130g00140.t01 AT1G04290.1 21798944
AT1G24050.1 VIT_07s0130g00150.t01 AT1G04290.1 21798944
AT1G24050.1 VIT_07s0031g02330.t01 AT3G48150.1 21798944
AT1G24050.1 VIT_07s0130g00490.t01 AT3G48150.1 21798944
AT1G24050.1 VIT_17s0000g03570.t01 AT4G30330.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr9P14520_001 Banana plastid 65.87 69.18
CDY68732 Canola cytosol 43.71 59.84
KRH45736 Soybean endoplasmic reticulum 65.87 59.14
KRG99265 Soybean endoplasmic reticulum 65.27 58.6
Os02t0741900-01 Rice cytosol 62.87 58.01
TraesCS6D01G288600.1 Wheat cytosol 61.08 56.35
TraesCS6B01G338900.1 Wheat cytosol 61.08 56.35
EES05545 Sorghum cytosol 61.08 56.04
GSMUA_Achr3P06060_001 Banana cytosol, peroxisome, plastid 64.07 55.73
Solyc04g025670.2.1 Tomato plastid 35.33 54.13
Zm00001d052276_P005 Maize cytosol 60.48 48.79
AT1G24050.1 Thale cress cytosol 50.3 44.68
Bra012415.1-P Field mustard cytosol 48.5 43.78
CDY60798 Canola cytosol 49.7 43.23
CDY16248 Canola cytosol 48.5 42.41
HORVU6Hr1G076310.1 Barley plastid 61.68 40.23
CDY59944 Canola cytosol 39.52 36.87
CDY03760 Canola cytosol 38.32 34.78
Bra007903.1-P Field mustard cytosol 37.72 34.24
AT1G70220.1 Thale cress cytosol 35.93 26.79
Protein Annotations
ArrayExpress:VIT_01s0026g00750EMBL:FN596002EnsemblPlants:VIT_01s0026g00750.t01EnsemblPlantsGene:VIT_01s0026g00750InterPro:Anticodon-binding_domncoils:Coil
PANTHER:PTHR13542PFAM:PF09793ProteinID:CBI32087ProteinID:CBI32087.3SMART:SM00995UniParc:UPI0001BE3D26
UniProt:D7TNL4MapMan:35.2::::
Description
No Description!
Coordinates
chr1:-:9543019..9555896
Molecular Weight (calculated)
18723.4 Da
IEP (calculated)
8.704
GRAVY (calculated)
-0.437
Length
167 amino acids
Sequence
(BLAST)
001: MTRSISTYVT PFDLVWLPNH HLRSTLQHPP QEGSDSGPRR NIRLLKANYI KEFSYLGQAE DPLDPKKCCI DLNALQAREE VAIRQAEADA ERIGVGVTVE
101: AQNIFDALSK TLPVRWDKTA IVVMNEVRVS SPYLPESVSG GTPAANERVK KVLEFERKRL QARVAGQ
Best Arabidopsis Sequence Match ( AT1G24050.1 )
(BLAST)
001: MDPAGASVAS AIGGEGEKFA VGNIYSVKVI TGDEFRGIVM AYDPIPNFVF FEEGTKPRPG HLKNTRMVNA SFITGLSYLG KTEDPLDSDN FSVDLNGLRA
101: KEALAIRQAE ADAERMGVGV TAEAQSIFDA LSKTLPVQWE NSDILVMKEV RVRSPYLSDC VFGGTDAANN RVKKVLELER RRLQLFGT
Arabidopsis Description
At1g24050/T23E23_11 [Source:UniProtKB/TrEMBL;Acc:Q8L466]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.