Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 1
- mitochondrion 1
- plastid 1
- peroxisome 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15497 | Canola | cytosol | 100.0 | 100.0 |
| CDX86643 | Canola | cytosol | 96.88 | 96.88 |
| Bra015301.1-P | Field mustard | cytosol | 76.88 | 79.87 |
| AT1G04290.1 | Thale cress | cytosol | 71.88 | 74.19 |
| VIT_07s0130g00140.t01 | Wine grape | cytosol | 60.0 | 62.34 |
| PGSC0003DMT400059405 | Potato | cytosol | 58.12 | 60.78 |
| KRH63917 | Soybean | cytosol | 59.38 | 59.01 |
| Solyc09g005390.2.1 | Tomato | cytosol | 56.25 | 58.82 |
| VIT_07s0130g00150.t01 | Wine grape | peroxisome | 55.62 | 57.79 |
| KRH63916 | Soybean | peroxisome | 43.12 | 49.29 |
| TraesCS5D01G037100.1 | Wheat | peroxisome | 48.75 | 48.45 |
| TraesCS1B01G365900.1 | Wheat | peroxisome | 47.5 | 47.5 |
| TraesCS5A01G029400.1 | Wheat | peroxisome | 47.5 | 47.2 |
| TraesCS5B01G028000.1 | Wheat | peroxisome | 46.88 | 46.58 |
| EES19410 | Sorghum | peroxisome | 46.25 | 45.4 |
| Zm00001d026704_P001 | Maize | peroxisome | 45.62 | 41.95 |
| GSMUA_Achr9P00370_001 | Banana | mitochondrion | 50.62 | 39.32 |
| HORVU5Hr1G007830.6 | Barley | extracellular, peroxisome | 38.75 | 31.0 |
| Bra018375.1-P | Field mustard | peroxisome | 30.62 | 30.82 |
| Bra021167.1-P | Field mustard | cytosol | 27.5 | 27.85 |
| Bra014316.1-P | Field mustard | cytoskeleton, cytosol, peroxisome | 25.0 | 25.32 |
Protein Annotations
| EnsemblPlants:Bra030563.1 | EnsemblPlants:Bra030563.1-P | EnsemblPlantsGene:Bra030563 | Gene3D:3.10.129.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016787 | GO:GO:0047617 | InterPro:HotDog_dom_sf | InterPro:PAAI_dom | InterPro:Thioestr_dom | PANTHER:PTHR21660 |
| PFAM:PF03061 | SUPFAM:SSF54637 | TIGRFAMs:TIGR00369 | UniParc:UPI00025458A6 | UniProt:M4EP43 | MapMan:35.2 |
Description
AT1G04290 (E=3e-059) | thioesterase family protein
Coordinates
chrA08:+:21301993..21302637
Molecular Weight (calculated)
17493.4 Da
IEP (calculated)
9.414
GRAVY (calculated)
-0.104
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLGSVTRYL EGEVIDEGGK DKESKVAKLP SRFIERFVLK GIKVDLIEPG RIVCSMKVQP HLLNAGKFLH GGAMATVVDL IGTAAIYTNV DSDQSEGVSV
101: EINVSYLDAA FLDEEIEIES RALRVGKAVA VASVELRRKK NGKMIAQGRH TKYLAPRPKL
101: EINVSYLDAA FLDEEIEIES RALRVGKAVA VASVELRRKK NGKMIAQGRH TKYLAPRPKL
001: MDLESVKKYL EGDEDEKAKE PMVAKLPHRF LERFVTNGLK VDLIEPGRIV CSMKIPPHLL NAGKFLHGGA TATLVDLIGS AVIYTAGASH SGVSVEINVS
101: YLDAAFLDEE IEIESKALRV GKAVAVVSVE LRKKTTGKII AQGRHTKYFA PRSNL
101: YLDAAFLDEE IEIESKALRV GKAVAVVSVE LRKKTTGKII AQGRHTKYFA PRSNL
Arabidopsis Description
F19P19.27 protein [Source:UniProtKB/TrEMBL;Acc:P93828]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.