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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • peroxisome 3
  • mitochondrion 1
  • plastid 1
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
MultiLoc:peroxisome
Plant-mPloc:cytosol, mitochondrion, plastid
PProwler:peroxisome
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY20186 Canola cytosol 99.37 99.37
CDY28372 Canola peroxisome 99.37 99.37
AT3G16175.1 Thale cress cytosol 71.52 71.97
Bra014316.1-P Field mustard cytoskeleton, cytosol, peroxisome 50.0 50.0
KRH44334 Soybean peroxisome 34.18 34.18
Zm00001d030077_P001 Maize peroxisome 18.35 32.95
TraesCS3A01G154700.1 Wheat peroxisome 31.65 30.49
TraesCS3D01G162100.1 Wheat peroxisome 31.65 30.12
TraesCS3B01G181000.1 Wheat peroxisome 31.65 30.12
Os01t0229500-01 Rice plastid 31.01 29.34
Zm00001d008999_P001 Maize peroxisome, plastid 29.75 29.01
Zm00001d039303_P001 Maize peroxisome 29.75 28.83
EES02196 Sorghum plastid 29.11 28.22
EES15320 Sorghum cytosol 31.01 28.0
KRH47262 Soybean cytosol 21.52 27.87
Zm00001d006909_P001 Maize peroxisome 28.48 27.78
Zm00001d052281_P001 Maize peroxisome 28.48 27.78
Bra030563.1-P Field mustard cytosol 27.85 27.5
Zm00001d002652_P001 Maize peroxisome, plastid 27.85 27.16
Bra018375.1-P Field mustard peroxisome 27.22 27.04
Bra015301.1-P Field mustard cytosol 25.32 25.97
TraesCS3A01G154800.1 Wheat peroxisome 28.48 25.71
TraesCS3D01G162200.1 Wheat cytosol 27.22 24.57
Zm00001d005676_P002 Maize peroxisome 28.48 24.32
KXG31495 Sorghum peroxisome 30.38 23.53
VIT_09s0002g04160.t01 Wine grape cytoskeleton, cytosol, peroxisome 43.04 22.59
TraesCS3B01G181100.1 Wheat cytosol, mitochondrion, nucleus 27.22 18.61
Protein Annotations
EnsemblPlants:Bra021167.1EnsemblPlants:Bra021167.1-PEnsemblPlantsGene:Bra021167Gene3D:3.10.129.10GO:GO:0003674GO:GO:0003824
GO:GO:0016787GO:GO:0047617InterPro:HotDog_dom_sfInterPro:Thioestr_domPANTHER:PTHR21660PANTHER:PTHR21660:SF16
PFAM:PF03061SUPFAM:SSF54637UniParc:UPI0002543BCEUniProt:M4DXC1MapMan:35.2:
Description
AT3G16175 (E=1e-059) | thioesterase family protein
Coordinates
chrA01:-:23624368..23625244
Molecular Weight (calculated)
16902.4 Da
IEP (calculated)
6.681
GRAVY (calculated)
0.027
Length
158 amino acids
Sequence
(BLAST)
001: MEDSTILNTT TYLEALAQGN GLSEIEVLIL QGLELIHVGK GIIRCKLLVT DRVAGDDGTW HAGAITAVMD AIGAASVYST GDGLHSSVDL NASFYSAAKI
101: HEKVEVEARV KGTNGRLKSS MIEIRRERDG ELIATGRLWM APLVLKAKHT GSSNLSKL
Best Arabidopsis Sequence Match ( AT3G16175.1 )
(BLAST)
001: MVDPTIHNTT TYLEEIAKGN GQTEFEILIL KGLELIHVGK GILRCKLLVT DHVVGEDGSW NAGVITAVMD SIGASAVYSS GGGLHISVDL NSSFYSTAKI
101: HETVEIEARV NGSNGGLKSA VIEIRRETSG EIIATGRLWM APLSVKAIQN VSTLSKL
Arabidopsis Description
At3g16179/At3g16179 [Source:UniProtKB/TrEMBL;Acc:Q940V5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.