Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G154800.1 | Wheat | peroxisome | 69.7 | 92.0 |
| TraesCS3D01G162200.1 | Wheat | cytosol | 65.8 | 86.86 |
| Zm00001d039303_P001 | Maize | peroxisome | 41.99 | 59.51 |
| EES15320 | Sorghum | cytosol | 39.83 | 52.57 |
| TraesCS3B01G181000.1 | Wheat | peroxisome | 35.5 | 49.4 |
| KXG31495 | Sorghum | peroxisome | 42.86 | 48.53 |
| CDY70889 | Canola | cytosol, peroxisome | 8.23 | 32.76 |
| TraesCS5B01G370500.2 | Wheat | peroxisome | 19.91 | 29.49 |
| TraesCS1B01G365900.1 | Wheat | peroxisome | 19.48 | 28.12 |
| TraesCS5B01G028000.1 | Wheat | peroxisome | 19.48 | 27.95 |
| CDY28372 | Canola | peroxisome | 19.05 | 27.85 |
| TraesCS2B01G322900.1 | Wheat | peroxisome | 17.75 | 27.52 |
| CDY20186 | Canola | cytosol | 18.61 | 27.22 |
| Bra021167.1-P | Field mustard | cytosol | 18.61 | 27.22 |
| AT3G16175.1 | Thale cress | cytosol | 17.32 | 25.48 |
| CDX87876 | Canola | peroxisome | 17.32 | 25.32 |
| Bra014316.1-P | Field mustard | cytoskeleton, cytosol, peroxisome | 17.32 | 25.32 |
| KRH44334 | Soybean | peroxisome | 16.88 | 24.68 |
| AT1G52191.1 | Thale cress | cytosol, extracellular, golgi | 14.29 | 23.91 |
| TraesCS4B01G139500.1 | Wheat | plastid | 16.02 | 19.89 |
| KRH47262 | Soybean | cytosol | 10.39 | 19.67 |
| TraesCS4B01G139400.1 | Wheat | mitochondrion | 18.61 | 18.61 |
| VIT_09s0002g04160.t01 | Wine grape | cytoskeleton, cytosol, peroxisome | 21.21 | 16.28 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G181100.1 | EnsemblPlantsGene:TraesCS3B01G181100 | InterPro:HotDog_dom_sf | InterPro:Thioestr_dom | ncoils:Coil | PANTHER:PTHR21660 |
| PANTHER:PTHR21660:SF16 | PFAM:PF03061 | SEG:seg | SUPFAM:SSF54637 | TIGR:cd03443 | MapMan:35.2 |
Description
No Description!
Coordinates
chr3B:+:189387663..189388453
Molecular Weight (calculated)
24993.1 Da
IEP (calculated)
10.318
GRAVY (calculated)
-0.065
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYVVRKRPR SNQIKHTQHK HMDDAAAEAE ALRLRLAAIA RKWLEDPRAD YAGNVTDAAS QKRHALNSLV LGGARISLSE HGRVVCSFHV PPPLTVSTHS
101: SWLIARASGL EISIRTAACL CLFLLSARVQ DSDGTWHAGA LAAAVDNMCS AVVFTVVGAP TATVHYGLSY FSPVACNEEV QLDGRVVGRK GKLTAAVVRV
201: RKMGSGELVA IGRQWMTPAW PTKSNKSRSS L
101: SWLIARASGL EISIRTAACL CLFLLSARVQ DSDGTWHAGA LAAAVDNMCS AVVFTVVGAP TATVHYGLSY FSPVACNEEV QLDGRVVGRK GKLTAAVVRV
201: RKMGSGELVA IGRQWMTPAW PTKSNKSRSS L
001: MVDPTIHNTT TYLEEIAKGN GQTEFEILIL KGLELIHVGK GILRCKLLVT DHVVGEDGSW NAGVITAVMD SIGASAVYSS GGGLHISVDL NSSFYSTAKI
101: HETVEIEARV NGSNGGLKSA VIEIRRETSG EIIATGRLWM APLSVKAIQN VSTLSKL
101: HETVEIEARV NGSNGGLKSA VIEIRRETSG EIIATGRLWM APLSVKAIQN VSTLSKL
Arabidopsis Description
At3g16179/At3g16179 [Source:UniProtKB/TrEMBL;Acc:Q940V5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.