Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G179200.1 | Wheat | cytosol | 66.23 | 82.26 |
| TraesCS4D01G134100.1 | Wheat | cytosol | 61.47 | 76.34 |
| HORVU4Hr1G027080.1 | Barley | plastid | 58.87 | 74.32 |
| TraesCS4B01G139500.1 | Wheat | plastid | 51.52 | 63.98 |
| Zm00001d048584_P001 | Maize | cytosol | 42.86 | 58.58 |
| EES10320 | Sorghum | cytosol | 41.99 | 54.49 |
| Os02t0521700-01 | Rice | cytosol | 39.39 | 50.0 |
| PGSC0003DMT400078213 | Potato | cytosol, peroxisome, plastid | 32.9 | 48.1 |
| KRH16998 | Soybean | cytosol, nucleus, peroxisome | 21.21 | 48.04 |
| KRH72635 | Soybean | mitochondrion | 32.47 | 47.17 |
| Solyc06g076690.2.1 | Tomato | cytosol, peroxisome, plastid | 32.03 | 46.84 |
| Bra018375.1-P | Field mustard | peroxisome | 31.6 | 45.91 |
| CDY53360 | Canola | peroxisome | 31.6 | 45.91 |
| CDY45458 | Canola | peroxisome | 31.17 | 45.28 |
| AT2G29590.1 | Thale cress | cytosol | 29.87 | 43.67 |
| GSMUA_Achr5P28830_001 | Banana | cytosol | 29.0 | 42.41 |
| Solyc06g076680.2.1 | Tomato | cytosol, nucleus, peroxisome | 28.57 | 41.77 |
| VIT_06s0004g06050.t01 | Wine grape | cytosol | 28.57 | 41.77 |
| PGSC0003DMT400078209 | Potato | cytosol | 28.57 | 38.82 |
| TraesCS5B01G370500.2 | Wheat | peroxisome | 20.78 | 30.77 |
| TraesCS1B01G365900.1 | Wheat | peroxisome | 17.75 | 25.62 |
| TraesCS5B01G028000.1 | Wheat | peroxisome | 17.32 | 24.84 |
| TraesCS2B01G322900.1 | Wheat | peroxisome | 16.02 | 24.83 |
| TraesCS3B01G181000.1 | Wheat | peroxisome | 17.75 | 24.7 |
| TraesCS3B01G181100.1 | Wheat | cytosol, mitochondrion, nucleus | 18.61 | 18.61 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G139400.1 | EnsemblPlantsGene:TraesCS4B01G139400 | Gene3D:3.10.129.10 | InterPro:HotDog_dom_sf | PANTHER:PTHR21660 | PANTHER:PTHR21660:SF8 |
| SEG:seg | SUPFAM:SSF54637 | TIGR:cd03443 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4B:+:183612376..183613156
Molecular Weight (calculated)
24514.1 Da
IEP (calculated)
9.279
GRAVY (calculated)
-0.161
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLVLVRRPW TLLAWHQQPE SVGHKFPNPP EKDNHQAELQ QVAMADSPEL ARARDVLSVR ADEHARVDAL SSAASASASL SSATTHLSPS FFEGFALRGI
101: RVLRLHPGFI HCSYTVPPSL TDSTTGCLAA GAVVALVDEI GSAASISEGQ NLKVSVDMSV AFPDLSQARP GDRLSITARA LGHKGAYSGT HVLFTNAGTG
201: NVVAEGRHSL FGNMKKSPPP KPAATTHRSN L
101: RVLRLHPGFI HCSYTVPPSL TDSTTGCLAA GAVVALVDEI GSAASISEGQ NLKVSVDMSV AFPDLSQARP GDRLSITARA LGHKGAYSGT HVLFTNAGTG
201: NVVAEGRHSL FGNMKKSPPP KPAATTHRSN L
001: MMEKIMEYLQ LSDEVVDDGE APRVEEFLGE GKSFYENFSL RGIRVNRVEP GFISCSFKVP LRLTDRDKNL ANGAIANLVD EVGGALVHGE GLPMSVSVDM
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
Arabidopsis Description
At2g29590 [Source:UniProtKB/TrEMBL;Acc:Q9ZW37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.