CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018375.1-P	Field mustard	peroxisome	95.6	95.6
CDY45458	Canola	peroxisome	85.53	85.53
AT2G29590.1	Thale cress	cytosol	67.3	67.72
KRH16998	Soybean	cytosol, nucleus, peroxisome	40.88	63.73
Solyc06g076690.2.1	Tomato	cytosol, peroxisome, plastid	62.26	62.66
PGSC0003DMT400078213	Potato	cytosol, peroxisome, plastid	62.26	62.66
KRH72635	Soybean	mitochondrion	59.12	59.12
VIT_06s0004g06050.t01	Wine grape	cytosol	51.57	51.9
Solyc06g076680.2.1	Tomato	cytosol, nucleus, peroxisome	49.69	50.0
GSMUA_Achr5P28830_001	Banana	cytosol	47.8	48.1
PGSC0003DMT400078209	Potato	cytosol	50.94	47.65
HORVU4Hr1G027140.2	Barley	cytosol	32.08	41.8
Zm00001d048584_P001	Maize	cytosol	41.51	39.05
TraesCS4A01G179200.1	Wheat	cytosol	45.28	38.71
Os02t0521700-01	Rice	cytosol	44.03	38.46
HORVU4Hr1G027080.1	Barley	plastid	44.03	38.25
TraesCS4D01G134100.1	Wheat	cytosol	44.65	38.17
TraesCS4D01G134200.1	Wheat	cytosol	42.14	36.02
EES10320	Sorghum	cytosol	40.25	35.96
TraesCS4A01G179300.1	Wheat	cytosol, mitochondrion, plastid	40.88	34.95
TraesCS4B01G139500.1	Wheat	plastid	40.88	34.95
CDX89829	Canola	cytosol	31.45	32.47
CDY18217	Canola	peroxisome	31.45	32.47
TraesCS4B01G139400.1	Wheat	mitochondrion	45.91	31.6
CDX86643	Canola	cytosol	30.19	30.0
CDY15497	Canola	cytosol	30.19	30.0
CDY28372	Canola	peroxisome	27.04	27.22
CDY20186	Canola	cytosol	27.04	27.22
CDX87876	Canola	peroxisome	23.27	23.42
CDY70889	Canola	cytosol, peroxisome	7.55	20.69

Protein Annotations

EnsemblPlants:CDY53360	EnsemblPlantsGene:GSBRNA2T00010503001	Gene3D:3.10.129.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0047617	InterPro:HotDog_dom_sf	InterPro:Thioestr_dom	PANTHER:PTHR21660	PANTHER:PTHR21660:SF8	PFAM:PF03061
ProteinID:CDY53360	ProteinID:CDY53360.1	SEG:seg	SUPFAM:SSF54637	UniParc:UPI0004EBBC1E	UniProt:A0A078IQH3
MapMan:35.2	:	:	:	:	:

Description

BnaC04g54400DBnaC04g54400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQH3]

Coordinates

chrLK033193:+:17109..18169

Molecular Weight (calculated)

17659.5 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.194

Length

159 amino acids

Sequence
(BLAST)

001: MEERMIMEKI REHLHLGEDV DVSDAPRKVE KGRSFYEDFS LRGIRVNRVD PGFISCSFKV PLRLTDKEGY LANGAIANLV DEVGGAVVYV EGLPMNVSVD
101: MSIAFLSKAK LGEELEITSR VMGERGGYKG TIVVVRNKMT GEIIAEGRHS LFGRQPSKL

Best Arabidopsis Sequence Match ( AT2G29590.1 )
(BLAST)

001: MMEKIMEYLQ LSDEVVDDGE APRVEEFLGE GKSFYENFSL RGIRVNRVEP GFISCSFKVP LRLTDRDKNL ANGAIANLVD EVGGALVHGE GLPMSVSVDM
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL

Arabidopsis Description

At2g29590 [Source:UniProtKB/TrEMBL;Acc:Q9ZW37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.