Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 3
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078209 | Potato | cytosol | 96.2 | 89.41 |
| Solyc06g076690.2.1 | Tomato | cytosol, peroxisome, plastid | 72.15 | 72.15 |
| KRH72635 | Soybean | mitochondrion | 58.23 | 57.86 |
| KRH16998 | Soybean | cytosol, nucleus, peroxisome | 36.71 | 56.86 |
| Bra018375.1-P | Field mustard | peroxisome | 50.63 | 50.31 |
| CDY53360 | Canola | peroxisome | 50.0 | 49.69 |
| CDY45458 | Canola | peroxisome | 49.37 | 49.06 |
| VIT_06s0004g06050.t01 | Wine grape | cytosol | 48.1 | 48.1 |
| GSMUA_Achr5P28830_001 | Banana | cytosol | 47.47 | 47.47 |
| AT2G29590.1 | Thale cress | cytosol | 46.2 | 46.2 |
| HORVU4Hr1G027140.2 | Barley | cytosol | 29.75 | 38.52 |
| Os02t0521700-01 | Rice | cytosol | 41.14 | 35.71 |
| Zm00001d048584_P001 | Maize | cytosol | 37.97 | 35.5 |
| HORVU4Hr1G027080.1 | Barley | plastid | 39.87 | 34.43 |
| TraesCS4A01G179200.1 | Wheat | cytosol | 40.51 | 34.41 |
| TraesCS4D01G134100.1 | Wheat | cytosol | 39.87 | 33.87 |
| EES10320 | Sorghum | cytosol | 36.71 | 32.58 |
| Solyc09g005390.2.1 | Tomato | cytosol | 30.38 | 31.37 |
| TraesCS4B01G139500.1 | Wheat | plastid | 36.08 | 30.65 |
| TraesCS4D01G134200.1 | Wheat | cytosol | 36.08 | 30.65 |
| TraesCS4A01G179300.1 | Wheat | cytosol, mitochondrion, plastid | 34.18 | 29.03 |
| TraesCS4B01G139400.1 | Wheat | mitochondrion | 41.77 | 28.57 |
Protein Annotations
| EnsemblPlants:Solyc06g076680.2.1 | EnsemblPlantsGene:Solyc06g076680.2 | Gene3D:3.10.129.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0016787 | GO:GO:0047617 | InterPro:HotDog_dom_sf |
| InterPro:Thioestr_dom | PANTHER:PTHR21660 | PANTHER:PTHR21660:SF8 | PFAM:PF03061 | SUPFAM:SSF54637 | UniParc:UPI00027672DF |
| UniProt:K4CA28 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:47616947..47618198
Molecular Weight (calculated)
17026.5 Da
IEP (calculated)
6.777
GRAVY (calculated)
-0.065
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSKAFLEL TQEESDRVSS LDFLPIPTGA EFSLYECYAL RGIRVDRLES DRVFCTFKVP PRLTNREGKL AAGAIANLID AVGAGCVNIG GHPVNVSVDM
101: SISFHSSAKI DDELEIIGQV LGKKGGYSGT SVLVKNKATG ELIAEGRHSL FGKYASKM
101: SISFHSSAKI DDELEIIGQV LGKKGGYSGT SVLVKNKATG ELIAEGRHSL FGKYASKM
001: MMEKIMEYLQ LSDEVVDDGE APRVEEFLGE GKSFYENFSL RGIRVNRVEP GFISCSFKVP LRLTDRDKNL ANGAIANLVD EVGGALVHGE GLPMSVSVDM
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
Arabidopsis Description
At2g29590 [Source:UniProtKB/TrEMBL;Acc:Q9ZW37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.