Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G139500.1 | Wheat | plastid | 91.8 | 60.22 |
| TraesCS4D01G134200.1 | Wheat | cytosol | 90.16 | 59.14 |
| TraesCS4A01G179300.1 | Wheat | cytosol, mitochondrion, plastid | 87.7 | 57.53 |
| HORVU4Hr1G027080.1 | Barley | plastid | 77.05 | 51.37 |
| KRH16998 | Soybean | cytosol, nucleus, peroxisome | 36.89 | 44.12 |
| Zm00001d048584_P001 | Maize | cytosol | 56.56 | 40.83 |
| EES10320 | Sorghum | cytosol | 56.56 | 38.76 |
| Os02t0521700-01 | Rice | cytosol | 57.38 | 38.46 |
| PGSC0003DMT400078213 | Potato | cytosol, peroxisome, plastid | 45.08 | 34.81 |
| Solyc06g076690.2.1 | Tomato | cytosol, peroxisome, plastid | 44.26 | 34.18 |
| GSMUA_Achr5P28830_001 | Banana | cytosol | 43.44 | 33.54 |
| KRH72635 | Soybean | mitochondrion | 43.44 | 33.33 |
| VIT_06s0004g06050.t01 | Wine grape | cytosol | 41.8 | 32.28 |
| CDY53360 | Canola | peroxisome | 41.8 | 32.08 |
| CDY45458 | Canola | peroxisome | 41.8 | 32.08 |
| Bra018375.1-P | Field mustard | peroxisome | 41.8 | 32.08 |
| AT2G29590.1 | Thale cress | cytosol | 40.98 | 31.65 |
| Solyc06g076680.2.1 | Tomato | cytosol, nucleus, peroxisome | 38.52 | 29.75 |
| PGSC0003DMT400078209 | Potato | cytosol | 38.52 | 27.65 |
| HORVU2Hr1G125430.2 | Barley | cytosol, peroxisome | 27.87 | 21.79 |
| HORVU2Hr1G076160.3 | Barley | cytosol | 18.03 | 17.6 |
| HORVU5Hr1G007830.6 | Barley | extracellular, peroxisome | 19.67 | 12.0 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G027140.2 | EnsemblPlantsGene:HORVU4Hr1G027140 | Gene3D:3.10.129.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016787 |
| GO:GO:0047617 | InterPro:HotDog_dom_sf | PANTHER:PTHR21660 | PANTHER:PTHR21660:SF8 | SEG:seg | SUPFAM:SSF54637 |
| UniParc:UPI000B4781AA | UniProt:A0A287NN02 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:165267199..165271629
Molecular Weight (calculated)
12525.9 Da
IEP (calculated)
8.241
GRAVY (calculated)
0.246
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: HCSYDVPPSL TDTSTGCLAA GVVVALVDEI GYAAAISDAQ NFKVSVDMSV AFPDLSQARA GDRLSITARV LGHKGAYSGT HVLLANASTG NVVAEGRHSI
101: FGNLKKALLK PAATTTVIKS NL
101: FGNLKKALLK PAATTTVIKS NL
001: MMEKIMEYLQ LSDEVVDDGE APRVEEFLGE GKSFYENFSL RGIRVNRVEP GFISCSFKVP LRLTDRDKNL ANGAIANLVD EVGGALVHGE GLPMSVSVDM
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
Arabidopsis Description
At2g29590 [Source:UniProtKB/TrEMBL;Acc:Q9ZW37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.