Factsheet for PGSC0003DMT400078209

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076680.2.1	Tomato	cytosol, nucleus, peroxisome	89.41	96.2
PGSC0003DMT400078213	Potato	cytosol, peroxisome, plastid	70.0	75.32
KRH72635	Soybean	mitochondrion	54.12	57.86
KRH16998	Soybean	cytosol, nucleus, peroxisome	33.53	55.88
Bra018375.1-P	Field mustard	peroxisome	48.24	51.57
CDY53360	Canola	peroxisome	47.65	50.94
CDY45458	Canola	peroxisome	47.06	50.31
VIT_06s0004g06050.t01	Wine grape	cytosol	45.29	48.73
GSMUA_Achr5P28830_001	Banana	cytosol	44.71	48.1
AT2G29590.1	Thale cress	cytosol	42.94	46.2
HORVU4Hr1G027140.2	Barley	cytosol	27.65	38.52
Os02t0521700-01	Rice	cytosol	38.24	35.71
Zm00001d048584_P001	Maize	cytosol	34.71	34.91
HORVU4Hr1G027080.1	Barley	plastid	37.06	34.43
TraesCS4A01G179200.1	Wheat	cytosol	37.65	34.41
TraesCS4D01G134100.1	Wheat	cytosol	37.06	33.87
EES10320	Sorghum	cytosol	33.53	32.02
PGSC0003DMT400059405	Potato	cytosol	27.65	30.72
TraesCS4B01G139500.1	Wheat	plastid	33.53	30.65
TraesCS4D01G134200.1	Wheat	cytosol	33.53	30.65
TraesCS4A01G179300.1	Wheat	cytosol, mitochondrion, plastid	31.76	29.03
TraesCS4B01G139400.1	Wheat	mitochondrion	38.82	28.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400078209	EnsemblPlantsGene:PGSC0003DMG400030433	EntrezGene:102582529	Gene3D:3.10.129.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016787	GO:GO:0047617	InterPro:HotDog_dom_sf	PANTHER:PTHR21660	PANTHER:PTHR21660:SF8	PGSC:PGSC0003DMG400030433
RefSeq:XP_015165707.1	SUPFAM:SSF54637	UniParc:UPI000295DE1A	UniProt:M1CZM3	MapMan:35.2	:

Description

Acyl-CoA thioesterase [Source:PGSC_GENE;Acc:PGSC0003DMG400030433]

Coordinates

chr6:-:56978574..56980372

Molecular Weight (calculated)

18548.4 Da

IEP (calculated)

7.435

GRAVY (calculated)

0.032

Length

170 amino acids

Sequence
(BLAST)

001: MEKSKAFLEL TQEESDRVSS LDFLPLRTGA EFSFYECYAL RGIRVDRLES DRVFCTFKVP PRLTDREGKL AAGAIANLID AVGAGCVNVG GHPVNVSVDM
101: SISFHSSAKI DILLYAFFLG YLQDELEIIG QVLGKKGGYS GTSVLVKNKA TGELIAQGRH SLFGKYASKM

Best Arabidopsis Sequence Match ( AT2G29590.1 )
(BLAST)

001: MMEKIMEYLQ LSDEVVDDGE APRVEEFLGE GKSFYENFSL RGIRVNRVEP GFISCSFKVP LRLTDRDKNL ANGAIANLVD EVGGALVHGE GLPMSVSVDM
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL

Arabidopsis Description

At2g29590 [Source:UniProtKB/TrEMBL;Acc:Q9ZW37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.