Factsheet for VIT_06s0004g06050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
peroxisome 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16998	Soybean	cytosol, nucleus, peroxisome	37.97	58.82
GSMUA_Achr5P28830_001	Banana	cytosol	57.59	57.59
Solyc06g076690.2.1	Tomato	cytosol, peroxisome, plastid	56.33	56.33
KRH72635	Soybean	mitochondrion	56.33	55.97
PGSC0003DMT400078213	Potato	cytosol, peroxisome, plastid	55.06	55.06
AT2G29590.1	Thale cress	cytosol	53.8	53.8
CDY45458	Canola	peroxisome	53.16	52.83
Bra018375.1-P	Field mustard	peroxisome	52.53	52.2
CDY53360	Canola	peroxisome	51.9	51.57
Solyc06g076680.2.1	Tomato	cytosol, nucleus, peroxisome	48.1	48.1
PGSC0003DMT400078209	Potato	cytosol	48.73	45.29
HORVU4Hr1G027140.2	Barley	cytosol	32.28	41.8
Os02t0521700-01	Rice	cytosol	43.67	37.91
Zm00001d048584_P001	Maize	cytosol	40.51	37.87
EES10320	Sorghum	cytosol	41.77	37.08
HORVU4Hr1G027080.1	Barley	plastid	42.41	36.61
TraesCS4D01G134100.1	Wheat	cytosol	41.77	35.48
VIT_07s0130g00140.t01	Wine grape	cytosol	34.18	35.06
TraesCS4B01G139500.1	Wheat	plastid	40.51	34.41
TraesCS4D01G134200.1	Wheat	cytosol	40.51	34.41
TraesCS4A01G179200.1	Wheat	cytosol	40.51	34.41
TraesCS4A01G179300.1	Wheat	cytosol, mitochondrion, plastid	39.87	33.87
VIT_07s0130g00150.t01	Wine grape	peroxisome	32.91	33.77
TraesCS4B01G139400.1	Wheat	mitochondrion	41.77	28.57
VIT_09s0002g04160.t01	Wine grape	cytoskeleton, cytosol, peroxisome	28.48	14.95

Protein Annotations

EntrezGene:100246755	wikigene:100246755	Gene3D:3.10.129.10	MapMan:35.2	ProteinID:CBI16006	ProteinID:CBI16006.3
UniProt:D7SK30	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0016787	GO:GO:0047617	InterPro:HotDog_dom_sf
EntrezGene:LOC100246755	wikigene:LOC100246755	PFAM:PF03061	PANTHER:PTHR21660	PANTHER:PTHR21660:SF8	SUPFAM:SSF54637
TIGR:TC54087	InterPro:Thioestr_dom	UniParc:UPI00015C7CEA	ArrayExpress:VIT_06s0004g06050	EnsemblPlantsGene:VIT_06s0004g06050	EnsemblPlants:VIT_06s0004g06050.t01
unigene:Vvi.2442	RefSeq:XP_002280576	RefSeq:XP_002280576.1	:	:	:

Description

No Description!

Coordinates

chr6:-:6841798..6843831

Molecular Weight (calculated)

17289.0 Da

IEP (calculated)

7.604

GRAVY (calculated)

0.019

Length

158 amino acids

Sequence
(BLAST)

001: MGKTIELLKL TVDESRIVSQ LSVPPHRPNL ESSFYEEFSI RGIRVDRVEP GLITCTFKVP ARLIDRNGYL SSGAIANLVD EIGAALMFVV GSPMDVSVDM
101: SISYLSNAKA EDELEITSKF LGQKGGYFGT LVLLKNKATG EIVAEGRHSL FKKHASKL

Best Arabidopsis Sequence Match ( AT2G29590.1 )
(BLAST)

001: MMEKIMEYLQ LSDEVVDDGE APRVEEFLGE GKSFYENFSL RGIRVNRVEP GFISCSFKVP LRLTDRDKNL ANGAIANLVD EVGGALVHGE GLPMSVSVDM
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL

Arabidopsis Description

At2g29590 [Source:UniProtKB/TrEMBL;Acc:Q9ZW37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.