Factsheet for VIT_09s0002g04160.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
peroxisome 3
plastid 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28372	Canola	peroxisome	22.92	43.67
AT3G16175.1	Thale cress	cytosol	22.59	43.31
Zm00001d030077_P001	Maize	peroxisome	12.62	43.18
CDY70889	Canola	cytosol, peroxisome	8.31	43.1
Bra021167.1-P	Field mustard	cytosol	22.59	43.04
CDY20186	Canola	cytosol	22.59	43.04
AT1G52191.1	Thale cress	cytosol, extracellular, golgi	19.6	42.75
KRH44334	Soybean	peroxisome	21.93	41.77
Bra014316.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	21.59	41.14
CDX87876	Canola	peroxisome	20.93	39.87
Zm00001d008999_P001	Maize	peroxisome, plastid	20.27	37.65
EES02196	Sorghum	plastid	19.6	36.2
TraesCS3B01G181000.1	Wheat	peroxisome	19.93	36.14
TraesCS3A01G154700.1	Wheat	peroxisome	19.6	35.98
Zm00001d052281_P001	Maize	peroxisome	19.27	35.8
Zm00001d006909_P001	Maize	peroxisome	19.27	35.8
TraesCS3D01G162100.1	Wheat	peroxisome	19.6	35.54
Os01t0229500-01	Rice	plastid	19.6	35.33
Zm00001d002652_P001	Maize	peroxisome, plastid	18.6	34.57
Zm00001d039303_P001	Maize	peroxisome	17.61	32.52
VIT_07s0130g00140.t01	Wine grape	cytosol	15.95	31.17
VIT_07s0130g00150.t01	Wine grape	peroxisome	15.95	31.17
KRH47262	Soybean	cytosol	12.29	30.33
EES15320	Sorghum	cytosol	17.61	30.29
Zm00001d005676_P002	Maize	peroxisome	18.6	30.27
VIT_06s0004g06050.t01	Wine grape	cytosol	14.95	28.48
TraesCS3A01G154800.1	Wheat	peroxisome	16.28	28.0
KXG31495	Sorghum	peroxisome	18.27	26.96
TraesCS3D01G162200.1	Wheat	cytosol	15.61	26.86
TraesCS3B01G181100.1	Wheat	cytosol, mitochondrion, nucleus	16.28	21.21

Protein Annotations

EntrezGene:100259970	wikigene:100259970	EntrezGene:100263452	wikigene:100263452	Gene3D:3.10.129.10	MapMan:35.2
EMBL:AM485913	ProteinID:CAN75402	ProteinID:CAN75402.1	ProteinID:CBI36113	ProteinID:CBI36113.3	UniProt:D7U0G7
EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0047617	InterPro:HotDog_dom_sf
EntrezGene:LOC100259970	wikigene:LOC100259970	EntrezGene:LOC100263452	wikigene:LOC100263452	PFAM:PF03061	PANTHER:PTHR21660
PANTHER:PTHR21660:SF16	SUPFAM:SSF54637	InterPro:Thioestr_dom	UniParc:UPI0001BE4804	ArrayExpress:VIT_09s0002g04160	EnsemblPlantsGene:VIT_09s0002g04160
EnsemblPlants:VIT_09s0002g04160.t01	unigene:Vvi.7226	RefSeq:XP_002279118	RefSeq:XP_002279118.1	RefSeq:XP_002284369	RefSeq:XP_002284369.1

Description

No Description!

Coordinates

chr9:-:3821590..3824309

Molecular Weight (calculated)

32829.4 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.048

Length

301 amino acids

Sequence
(BLAST)

001: MEGGPLQETQ EWQKWLEDLS KGTISHELEV ITLKGMQVVH GQKGLVCCNL VIPDCVSDKD GNWHVGAITT LIDTVGAAAI FSSTGQLKAS VDFNISYYST
101: AKIQEEVEIE AKVIGHKGRL SSVVVEIRRK NNGELIALGK QWMSSINIME DDPPREAQKW IEDLSRGASS HGLETLNLKG LQAIYVQKGL IHCDLVVPDC
201: VSDKDGNWHV GAISTLIDDV GAAAIFSFAG HVKASVDFSV SFYSTAKIQE EVEIEAKVVG HRGRLSSVVV EIRRKSNGEL IALGRQWMSA ATIIPSHLSK
301: I

Best Arabidopsis Sequence Match ( AT3G16175.1 )
(BLAST)

001: MVDPTIHNTT TYLEEIAKGN GQTEFEILIL KGLELIHVGK GILRCKLLVT DHVVGEDGSW NAGVITAVMD SIGASAVYSS GGGLHISVDL NSSFYSTAKI
101: HETVEIEARV NGSNGGLKSA VIEIRRETSG EIIATGRLWM APLSVKAIQN VSTLSKL

Arabidopsis Description

At3g16179/At3g16179 [Source:UniProtKB/TrEMBL;Acc:Q940V5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.