Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G139500.1 | Wheat | plastid | 94.62 | 94.62 |
| TraesCS4D01G134200.1 | Wheat | cytosol | 94.09 | 94.09 |
| HORVU4Hr1G027140.2 | Barley | cytosol | 57.53 | 87.7 |
| TraesCS4A01G179200.1 | Wheat | cytosol | 71.51 | 71.51 |
| Zm00001d048584_P001 | Maize | cytosol | 46.24 | 50.89 |
| EES10320 | Sorghum | cytosol | 45.16 | 47.19 |
| Os02t0521700-01 | Rice | cytosol | 45.16 | 46.15 |
| KRH16998 | Soybean | cytosol, nucleus, peroxisome | 25.27 | 46.08 |
| KRH72635 | Soybean | mitochondrion | 36.02 | 42.14 |
| Bra018375.1-P | Field mustard | peroxisome | 35.48 | 41.51 |
| CDY45458 | Canola | peroxisome | 35.48 | 41.51 |
| CDY53360 | Canola | peroxisome | 34.95 | 40.88 |
| AT2G29590.1 | Thale cress | cytosol | 34.41 | 40.51 |
| VIT_06s0004g06050.t01 | Wine grape | cytosol | 33.87 | 39.87 |
| PGSC0003DMT400078213 | Potato | cytosol, peroxisome, plastid | 33.33 | 39.24 |
| Solyc06g076690.2.1 | Tomato | cytosol, peroxisome, plastid | 32.8 | 38.61 |
| GSMUA_Achr5P28830_001 | Banana | cytosol | 32.8 | 38.61 |
| Solyc06g076680.2.1 | Tomato | cytosol, nucleus, peroxisome | 29.03 | 34.18 |
| PGSC0003DMT400078209 | Potato | cytosol | 29.03 | 31.76 |
| TraesCS5A01G368100.1 | Wheat | extracellular | 15.05 | 30.77 |
| TraesCS5A01G368200.1 | Wheat | peroxisome | 22.58 | 27.27 |
| TraesCS5A01G029400.1 | Wheat | peroxisome | 20.97 | 24.22 |
| TraesCS3A01G154700.1 | Wheat | peroxisome | 19.89 | 22.56 |
| TraesCS2A01G306200.1 | Wheat | peroxisome | 17.74 | 22.15 |
| TraesCS3A01G154800.1 | Wheat | peroxisome | 18.28 | 19.43 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G179300.1 | EnsemblPlantsGene:TraesCS4A01G179300 | Gene3D:3.10.129.10 | InterPro:HotDog_dom_sf | PANTHER:PTHR21660 | PANTHER:PTHR21660:SF8 |
| SEG:seg | SUPFAM:SSF54637 | TIGR:cd03443 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4A:+:452594126..452594781
Molecular Weight (calculated)
19423.1 Da
IEP (calculated)
9.868
GRAVY (calculated)
0.153
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSPGLARA RDVLRVSADD RARVDALSSA ASAYVSAASP HLSPSFFEGF ALRRIRVLSV HPGFIHCSYH VPVHTRDSST GCLAAGVVVA LVDEIGYAAA
101: ISDAQNFKVS VDMSVAFPDL SQARAGDRLS ITARVLGHKG AYSGTHVLLT NAVTGNVVAE GRHSVFGNLK KAPLKPAATT SLKSNL
101: ISDAQNFKVS VDMSVAFPDL SQARAGDRLS ITARVLGHKG AYSGTHVLLT NAVTGNVVAE GRHSVFGNLK KAPLKPAATT SLKSNL
001: MMEKIMEYLQ LSDEVVDDGE APRVEEFLGE GKSFYENFSL RGIRVNRVEP GFISCSFKVP LRLTDRDKNL ANGAIANLVD EVGGALVHGE GLPMSVSVDM
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
101: SIAFLSKAKL GEELEITSRL LGERGGYKGT IVVVRNKMTG EIIAEGRHSM FGRQASKL
Arabidopsis Description
At2g29590 [Source:UniProtKB/TrEMBL;Acc:Q9ZW37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.