Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | CDY16248 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | CDY60798 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | CDY68732 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92788 | Canola | plastid | 32.2 | 86.06 |
| CDY29262 | Canola | nucleus | 74.38 | 70.24 |
| CDX89288 | Canola | nucleus | 71.43 | 67.6 |
| AT4G26990.1 | Thale cress | plasma membrane | 66.44 | 61.81 |
| CDX92787 | Canola | cytosol, nucleus, plastid | 29.93 | 49.25 |
| KRH46148 | Soybean | plastid | 18.37 | 37.85 |
| KRG98802 | Soybean | nucleus | 33.79 | 30.1 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 37.41 | 28.7 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 31.75 | 27.67 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 31.75 | 27.61 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 8.39 | 27.41 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 24.26 | 25.24 |
| Zm00001d002243_P004 | Maize | mitochondrion | 25.4 | 24.67 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 25.4 | 24.56 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 23.58 | 23.48 |
| Os04t0625900-01 | Rice | plastid | 23.36 | 22.79 |
| KRH46146 | Soybean | nucleus, plastid | 14.51 | 22.3 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 20.41 | 20.45 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 20.18 | 20.27 |
| CDY08218 | Canola | cytosol | 16.33 | 13.28 |
| CDY26136 | Canola | cytosol | 15.87 | 13.18 |
| CDY51396 | Canola | cytosol | 17.46 | 12.94 |
| CDY33083 | Canola | nucleus | 17.46 | 12.94 |
| CDY33254 | Canola | extracellular | 18.14 | 12.5 |
| CDY39090 | Canola | cytosol | 16.55 | 11.08 |
| CDX82502 | Canola | nucleus | 18.59 | 7.99 |
| CDX75744 | Canola | golgi, plastid, vacuole | 18.14 | 7.05 |
Protein Annotations
| EnsemblPlants:CDY46672 | EnsemblPlantsGene:GSBRNA2T00085973001 | InterPro:LSM_dom_sf | InterPro:SM_dom_ATX | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF12 |
| PFAM:PF14438 | ProteinID:CDY46672 | ProteinID:CDY46672.1 | SEG:seg | SUPFAM:SSF50182 | UniParc:UPI0004EE4026 |
| UniProt:A0A078I993 | MapMan:35.2 | : | : | : | : |
Description
BnaA03g48360DBnaA03g48360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I993]
Coordinates
chrLK032681:+:78281..81299
Molecular Weight (calculated)
47832.5 Da
IEP (calculated)
9.217
GRAVY (calculated)
-0.342
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MCIVGLQVHV HVKDGSVFSG VFYTASFENG FGIVLKNAKM TKKGKSKANV ASGSVVETLV IMSPNIVQVV AEGVSLPSSV TGNSECEIVG SAMETLPSKP
101: RLSAGKKNGI EGRGNHHRRQ PGANILKRNE HIPDVHQEDI PSSSPSLDNM SERVKPIKED MLTPEPISNG FHDAAERPSS IDKSSSRSET VDETSELCQG
201: IMTSSNEPVP IQAIKKAKEF KLNPEAKNFS PSYTKRFSPS PAAMPDLQNV AYIPSNTPML PVPEPVYPEV GNIPYMPQTS PHSKFVPYGN LTAGNTVSVF
301: HFPQHMIGPI VNRAHPQRFT SPYQSVQASP MFVNPNPQVM VARSGQLYLQ PVSQNLVQAT PPLPPMLSRP LPPAQHVQYL KHQGVVAAGQ PMQLCVPQPF
401: TTGGLQPYSV PAQYPVMQPP FPTNQPMHIA VPNGFFGTKF P
101: RLSAGKKNGI EGRGNHHRRQ PGANILKRNE HIPDVHQEDI PSSSPSLDNM SERVKPIKED MLTPEPISNG FHDAAERPSS IDKSSSRSET VDETSELCQG
201: IMTSSNEPVP IQAIKKAKEF KLNPEAKNFS PSYTKRFSPS PAAMPDLQNV AYIPSNTPML PVPEPVYPEV GNIPYMPQTS PHSKFVPYGN LTAGNTVSVF
301: HFPQHMIGPI VNRAHPQRFT SPYQSVQASP MFVNPNPQVM VARSGQLYLQ PVSQNLVQAT PPLPPMLSRP LPPAQHVQYL KHQGVVAAGQ PMQLCVPQPF
401: TTGGLQPYSV PAQYPVMQPP FPTNQPMHIA VPNGFFGTKF P
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.