Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plasma membrane 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g025670.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | Solyc04g025670.2.1 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 86.56 | 86.39 |
| KRH46148 | Soybean | plastid | 16.8 | 39.72 |
| CDX92788 | Canola | plastid | 12.06 | 36.97 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 41.7 | 36.7 |
| KRG98802 | Soybean | nucleus | 33.99 | 34.75 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 8.89 | 33.33 |
| CDY46672 | Canola | nucleus | 27.67 | 31.75 |
| AT5G54920.2 | Thale cress | plastid | 31.23 | 30.27 |
| AT4G26990.1 | Thale cress | plasma membrane | 28.26 | 30.17 |
| CDY29262 | Canola | nucleus | 27.47 | 29.76 |
| CDX89288 | Canola | nucleus | 26.88 | 29.18 |
| Bra026388.1-P | Field mustard | nucleus | 26.48 | 28.63 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 25.49 | 28.29 |
| Zm00001d002243_P004 | Maize | mitochondrion | 25.3 | 28.19 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 24.51 | 27.99 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 23.32 | 27.83 |
| Os04t0625900-01 | Rice | plastid | 24.31 | 27.21 |
| KRH46146 | Soybean | nucleus, plastid | 15.02 | 26.48 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 22.13 | 25.45 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 20.55 | 23.69 |
| Solyc06g062860.2.1 | Tomato | cytosol | 16.21 | 13.16 |
| Solyc03g121950.2.1 | Tomato | plastid | 15.81 | 12.64 |
Protein Annotations
| MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010494 |
| GO:GO:0010603 | GO:GO:0016043 | GO:GO:0034063 | UniProt:K4CHD4 | PFAM:PF14438 | PANTHER:PTHR12854 |
| PANTHER:PTHR12854:SF12 | InterPro:SM_dom_ATX | EnsemblPlantsGene:Solyc07g064550.2 | EnsemblPlants:Solyc07g064550.2.1 | UniParc:UPI000276C61A | SEG:seg |
Description
No Description!
Coordinates
chr7:+:66636317..66643458
Molecular Weight (calculated)
54473.2 Da
IEP (calculated)
8.819
GRAVY (calculated)
-0.248
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYKKGGRFM AEEENGVGAT LRDALLFTTM CIVGLPVNVY IKDGGVYSGI FHTACVDDEY AIVLKRAKMI KKGSREANVA RGSLIETLVI LSEDLVQVVA
101: KGVMLSADCI QGHLDGDNAR TVCSNITYPE YTKKEMKATK SKVSTVDGEK ASKERYVRNG LISKQSDRRE SHESLRERTI REVQGSSSNV DVSVTQASHL
201: ENVTFMKNLE LSSNGICNGS PPLSSTKLDD PNNDRHSHEQ QTLGKTPCLG ATSSGAPITS VSCVSSSSAP ADLVPSRGSI HNVSTKESKL NPGAKIFSPS
301: TLQHRTVTPP VVPTMAYVPD SCPVVPIVTA EPAVEITPFA PHSSVPVKFV PYNNLAAGNG GLDVQYAQPT IGYMGSRTQP ARYGSQYHHL QAATGYVHPN
401: SQNVMVGRLG PLVYMHHPVS HDIVQSAAGF PQVSTRPVLI PHQVHPPKHQ GSTAPQALQL YMAPPVITGL QQPFTIPSIP ITQSSFPVMR PMQFPVPNGF
501: VPNKFA
101: KGVMLSADCI QGHLDGDNAR TVCSNITYPE YTKKEMKATK SKVSTVDGEK ASKERYVRNG LISKQSDRRE SHESLRERTI REVQGSSSNV DVSVTQASHL
201: ENVTFMKNLE LSSNGICNGS PPLSSTKLDD PNNDRHSHEQ QTLGKTPCLG ATSSGAPITS VSCVSSSSAP ADLVPSRGSI HNVSTKESKL NPGAKIFSPS
301: TLQHRTVTPP VVPTMAYVPD SCPVVPIVTA EPAVEITPFA PHSSVPVKFV PYNNLAAGNG GLDVQYAQPT IGYMGSRTQP ARYGSQYHHL QAATGYVHPN
401: SQNVMVGRLG PLVYMHHPVS HDIVQSAAGF PQVSTRPVLI PHQVHPPKHQ GSTAPQALQL YMAPPVITGL QQPFTIPSIP ITQSSFPVMR PMQFPVPNGF
501: VPNKFA
001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDENKYHP SSLNHQRQAG VRILKNSKKI
201: TDVHQEDNVE ARSSSCSLDN MSERVKPIEQ EKMPEPSSNG FHDATERPSS TENSSSQSTT VDENSEVSLV LVVSTNSLPP TQATDPDKKA KEFKLNPGAK
301: TFSPSLAKRL TSAHAGMTPV VANMGYVPSN TPMLPVPEAV QPEIGISPFL SHASSPSKFV PYTNLATGNA GGGSHFPQHM VGPTINRGQP HRFTTQYHSV
401: QPTPMLVNPN PQVMVGRSGQ LMYMQPISQD LVQGAPHNSH LPPRPLFTPQ QFQYPKHQSL IATGQPMHLY APQPFAANGH QPYTVMPTDI PVMQSPFPIN
501: RAMPIPVPNG FYGTKFL
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDENKYHP SSLNHQRQAG VRILKNSKKI
201: TDVHQEDNVE ARSSSCSLDN MSERVKPIEQ EKMPEPSSNG FHDATERPSS TENSSSQSTT VDENSEVSLV LVVSTNSLPP TQATDPDKKA KEFKLNPGAK
301: TFSPSLAKRL TSAHAGMTPV VANMGYVPSN TPMLPVPEAV QPEIGISPFL SHASSPSKFV PYTNLATGNA GGGSHFPQHM VGPTINRGQP HRFTTQYHSV
401: QPTPMLVNPN PQVMVGRSGQ LMYMQPISQD LVQGAPHNSH LPPRPLFTPQ QFQYPKHQSL IATGQPMHLY APQPFAANGH QPYTVMPTDI PVMQSPFPIN
501: RAMPIPVPNG FYGTKFL
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.