Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- plastid 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G26990.1 | Thale cress | plasma membrane | 41.57 | 45.78 |
| KRH46148 | Soybean | plastid | 17.24 | 42.06 |
| KRG98802 | Soybean | nucleus | 33.14 | 34.95 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 31.03 | 31.95 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 30.27 | 31.23 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 33.72 | 30.61 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 7.28 | 28.15 |
| KRH46146 | Soybean | nucleus, plastid | 14.94 | 27.18 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 21.07 | 24.83 |
| Os04t0625900-01 | Rice | plastid | 21.26 | 24.56 |
| Zm00001d002243_P004 | Maize | mitochondrion | 20.69 | 23.79 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 20.11 | 23.03 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 18.39 | 22.64 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 18.77 | 22.27 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 18.01 | 21.41 |
| AT1G54170.1 | Thale cress | nucleus | 16.28 | 14.48 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 16.48 | 14.26 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835583 | ProteinID:AED96557.1 | ArrayExpress:AT5G54920 | EnsemblPlantsGene:AT5G54920 | RefSeq:AT5G54920 |
| TAIR:AT5G54920 | RefSeq:AT5G54920-TAIR-G | EnsemblPlants:AT5G54920.2 | TAIR:AT5G54920.2 | Unigene:At.7207 | UniProt:F4K1W7 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010603 |
| GO:GO:0016043 | GO:GO:0034063 | RefSeq:NP_001119437.1 | PFAM:PF14438 | PO:PO:0000293 | PANTHER:PTHR12854 |
| PANTHER:PTHR12854:SF12 | InterPro:SM_dom_ATX | UniParc:UPI00017395CB | SEG:seg | : | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
Coordinates
chr5:+:22302000..22305795
Molecular Weight (calculated)
56546.2 Da
IEP (calculated)
9.740
GRAVY (calculated)
-0.441
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDEVGILQ NKYHPSSLNH QRQAGVRILK
201: NSKKITDVHQ EDNVEARSSS CSLDNMSERV KPIEQEKMPE PSSNGFHDAT ERPSSTENSS SQSTTVDENS EVSLVLVVST NSLPPTQATD PDKKAKEFKL
301: NPGAKTFSPS LAKRLTSAHA GMTPVVANMG YVPSNTPMLP VPEAVQPEIG ISPFLSHASS PSKFVPYTNL ATGNAGGGSH FPQHMVGPTI NRGQPHRFTT
401: QYHSVQPTPM LVNPNPQVMV GRSGQLMYMQ PISQDLVQGA PHNSHLPPRP LFTPQQFQYP KHQSLIATGQ PMHLYAPQPF AANGHQPYTV MPTDIPVMQS
501: PFPINRAMPI PVPNGFYGTK FL
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDEVGILQ NKYHPSSLNH QRQAGVRILK
201: NSKKITDVHQ EDNVEARSSS CSLDNMSERV KPIEQEKMPE PSSNGFHDAT ERPSSTENSS SQSTTVDENS EVSLVLVVST NSLPPTQATD PDKKAKEFKL
301: NPGAKTFSPS LAKRLTSAHA GMTPVVANMG YVPSNTPMLP VPEAVQPEIG ISPFLSHASS PSKFVPYTNL ATGNAGGGSH FPQHMVGPTI NRGQPHRFTT
401: QYHSVQPTPM LVNPNPQVMV GRSGQLMYMQ PISQDLVQGA PHNSHLPPRP LFTPQQFQYP KHQSLIATGQ PMHLYAPQPF AANGHQPYTV MPTDIPVMQS
501: PFPINRAMPI PVPNGFYGTK FL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.