Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | KRG99265 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | KRH45736 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46148 | Soybean | plastid | 40.0 | 92.52 |
| KRH46146 | Soybean | nucleus, plastid | 34.95 | 60.28 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 11.31 | 41.48 |
| CDX92788 | Canola | plastid | 12.53 | 37.58 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 43.43 | 37.39 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 36.16 | 35.31 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 34.75 | 33.99 |
| CDY46672 | Canola | nucleus | 30.1 | 33.79 |
| AT5G54920.2 | Thale cress | plastid | 34.95 | 33.14 |
| CDY29262 | Canola | nucleus | 31.11 | 32.98 |
| Os04t0625900-01 | Rice | plastid | 30.1 | 32.96 |
| Bra026388.1-P | Field mustard | nucleus | 30.91 | 32.69 |
| CDX89288 | Canola | nucleus | 30.71 | 32.62 |
| AT4G26990.1 | Thale cress | plasma membrane | 30.71 | 32.07 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 25.86 | 30.19 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 26.46 | 29.57 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 26.87 | 29.17 |
| Zm00001d002243_P004 | Maize | mitochondrion | 26.06 | 28.41 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 23.23 | 26.14 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 23.03 | 25.97 |
| KRH10084 | Soybean | nucleus | 17.98 | 13.86 |
| KRH23258 | Soybean | cytosol | 17.58 | 13.59 |
| KRH06143 | Soybean | cytosol, plastid | 17.17 | 13.54 |
| KRH47566 | Soybean | plastid | 16.77 | 13.13 |
Protein Annotations
| EntrezGene:100809285 | MapMan:35.2 | EMBL:ACUP02010922 | EnsemblPlantsGene:GLYMA_18G099000 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010603 | GO:GO:0016043 | GO:GO:0034063 |
| UniProt:K7MQZ4 | EnsemblPlants:KRG98802 | ProteinID:KRG98802 | ProteinID:KRG98802.1 | PFAM:PF14438 | PANTHER:PTHR12854 |
| PANTHER:PTHR12854:SF12 | InterPro:SM_dom_ATX | UniParc:UPI000233F2BE | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr18:-:10326925..10347143
Molecular Weight (calculated)
52484.5 Da
IEP (calculated)
6.928
GRAVY (calculated)
-0.377
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCRNRDSIT ENHTSSSSSS SDSLSEALLF TTMCIVGHPV DVHVKDGSVY SGIFHTASVH ADYGIVLKKA RMTKKGKGNN NVGNEGFVDT LVILSSDLVQ
101: VVAKGVMLHA DVVGGNITGG DEEAVAHNVC SESLTCEVEN HTGPLMDTKQ VNHSRQAGDD KSNSNGKTDN CGEKSEFVNE KTDEKIQSLN SSHETDTSLG
201: QEVAVEHGST DRTSIPSDNG LLCNNTPASV KASDRNSERS TSADSVSTNL TQGVDLIQDS QPARSNEISV PRGTGSTRNA KEFKLNPAAK TFSPSFVNPM
301: PATSAANMVY IPNSSPPVPV TIQPEVGFNT FASRPSMPVK VSQYSNLTVG NGGSGSQFSQ PIVGHVAHRA QPLRYATHYN PVLSEPAYMQ PSSPAVMVGR
401: SPQLVYVQPV SHDLIHGTTA VPPVSARPLM NHVQFPKQQG GTIGPAMPVC VPPPVLTSGH QPFTLRSHIP LLQPGFPVSR PISVPGPNGF YGTKF
101: VVAKGVMLHA DVVGGNITGG DEEAVAHNVC SESLTCEVEN HTGPLMDTKQ VNHSRQAGDD KSNSNGKTDN CGEKSEFVNE KTDEKIQSLN SSHETDTSLG
201: QEVAVEHGST DRTSIPSDNG LLCNNTPASV KASDRNSERS TSADSVSTNL TQGVDLIQDS QPARSNEISV PRGTGSTRNA KEFKLNPAAK TFSPSFVNPM
301: PATSAANMVY IPNSSPPVPV TIQPEVGFNT FASRPSMPVK VSQYSNLTVG NGGSGSQFSQ PIVGHVAHRA QPLRYATHYN PVLSEPAYMQ PSSPAVMVGR
401: SPQLVYVQPV SHDLIHGTTA VPPVSARPLM NHVQFPKQQG GTIGPAMPVC VPPPVLTSGH QPFTLRSHIP LLQPGFPVSR PISVPGPNGF YGTKF
001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDENKYHP SSLNHQRQAG VRILKNSKKI
201: TDVHQEDNVE ARSSSCSLDN MSERVKPIEQ EKMPEPSSNG FHDATERPSS TENSSSQSTT VDENSEVSLV LVVSTNSLPP TQATDPDKKA KEFKLNPGAK
301: TFSPSLAKRL TSAHAGMTPV VANMGYVPSN TPMLPVPEAV QPEIGISPFL SHASSPSKFV PYTNLATGNA GGGSHFPQHM VGPTINRGQP HRFTTQYHSV
401: QPTPMLVNPN PQVMVGRSGQ LMYMQPISQD LVQGAPHNSH LPPRPLFTPQ QFQYPKHQSL IATGQPMHLY APQPFAANGH QPYTVMPTDI PVMQSPFPIN
501: RAMPIPVPNG FYGTKFL
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDENKYHP SSLNHQRQAG VRILKNSKKI
201: TDVHQEDNVE ARSSSCSLDN MSERVKPIEQ EKMPEPSSNG FHDATERPSS TENSSSQSTT VDENSEVSLV LVVSTNSLPP TQATDPDKKA KEFKLNPGAK
301: TFSPSLAKRL TSAHAGMTPV VANMGYVPSN TPMLPVPEAV QPEIGISPFL SHASSPSKFV PYTNLATGNA GGGSHFPQHM VGPTINRGQP HRFTTQYHSV
401: QPTPMLVNPN PQVMVGRSGQ LMYMQPISQD LVQGAPHNSH LPPRPLFTPQ QFQYPKHQSL IATGQPMHLY APQPFAANGH QPYTVMPTDI PVMQSPFPIN
501: RAMPIPVPNG FYGTKFL
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.