Factsheet for AT4G26990.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92788	Canola	plastid	23.42	67.27
CDY46672	Canola	nucleus	61.81	66.44
CDX89288	Canola	nucleus	64.35	65.45
CDY29262	Canola	nucleus	64.14	65.1
Bra026388.1-P	Field mustard	nucleus	63.5	64.32
AT5G54920.2	Thale cress	plastid	45.78	41.57
KRH46148	Soybean	plastid	16.67	36.92
GSMUA_Achr3P23200_001	Banana	plastid	8.86	31.11
KRG98802	Soybean	nucleus	32.07	30.71
VIT_19s0090g00300.t01	Wine grape	nucleus	35.02	28.87
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	30.8	28.8
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	30.17	28.26
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	22.57	25.24
Zm00001d002243_P004	Maize	mitochondrion	23.84	24.89
KRH46146	Soybean	nucleus, plastid	14.77	24.39
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	22.15	23.7
Os04t0625900-01	Rice	plastid	22.57	23.67
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	22.36	23.25
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	19.2	20.68
HORVU2Hr1G106820.1	Barley	cytosol	18.99	20.5
AT1G54170.1	Thale cress	nucleus	17.93	14.48
AT3G14010.5	Thale cress	nucleus, plastid	16.46	12.94

Protein Annotations

MapMan:35.2	EntrezGene:828807	UniProt:A0A178V1U2	ProteinID:AEE85281.1	ArrayExpress:AT4G26990	EnsemblPlantsGene:AT4G26990
RefSeq:AT4G26990	TAIR:AT4G26990	RefSeq:AT4G26990-TAIR-G	EnsemblPlants:AT4G26990.1	TAIR:AT4G26990.1	EMBL:AY075624
EMBL:AY149941	Unigene:At.32128	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0010494	GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	RefSeq:NP_194429.3	ProteinID:OAP00337.1
PFAM:PF14438	PO:PO:0000293	PANTHER:PTHR12854	PANTHER:PTHR12854:SF12	UniProt:Q8RY61	InterPro:SM_dom_ATX
TMHMM:TMhelix	UniParc:UPI00000AC30A	SEG:seg	:	:	:

Description

AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]

Coordinates

chr4:-:13550892..13554436

Molecular Weight (calculated)

50527.2 Da

IEP (calculated)

8.211

GRAVY (calculated)

-0.201

Length

474 amino acids

Sequence
(BLAST)

001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.