CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16248
CDY60798
CDY68732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	CDY16248	AT1G24050.1	21798944
AT4G26990.1	CDY60798	AT1G24050.1	21798944
AT4G26990.1	CDY68732	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29262	Canola	nucleus	92.49	92.29
Bra026388.1-P	Field mustard	nucleus	89.91	89.53
CDX92788	Canola	plastid	25.32	71.52
CDY46672	Canola	nucleus	67.6	71.43
AT4G26990.1	Thale cress	plasma membrane	65.45	64.35
CDX92787	Canola	cytosol, nucleus, plastid	24.25	42.16
KRH46148	Soybean	plastid	17.38	37.85
KRG98802	Soybean	nucleus	32.62	30.71
GSMUA_Achr3P23200_001	Banana	plastid	8.15	28.15
VIT_19s0090g00300.t01	Wine grape	nucleus	34.55	28.0
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	29.61	27.22
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	29.18	26.88
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	22.75	23.93
Os04t0625900-01	Rice	plastid	22.75	23.45
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	21.24	23.35
Zm00001d002243_P004	Maize	mitochondrion	22.75	23.35
KRH46146	Soybean	nucleus, plastid	14.38	23.34
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	21.89	22.37
HORVU2Hr1G106820.1	Barley	cytosol	19.31	20.5
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	19.31	20.45
CDY08218	Canola	cytosol	15.88	13.65
CDY33083	Canola	nucleus	17.38	13.61
CDY26136	Canola	cytosol	15.24	13.37
CDY51396	Canola	cytosol	16.95	13.28
CDY33254	Canola	extracellular	17.17	12.5
CDY39090	Canola	cytosol	15.45	10.93
CDX82502	Canola	nucleus	18.03	8.19
CDX75744	Canola	golgi, plastid, vacuole	17.6	7.22

Protein Annotations

EnsemblPlants:CDX89288	EnsemblPlantsGene:GSBRNA2T00149502001	Gene3D:2.30.30.100	InterPro:LSM_dom_sf	InterPro:SM_dom_ATX	PANTHER:PTHR12854
PANTHER:PTHR12854:SF12	PFAM:PF14438	ProteinID:CDX89288	ProteinID:CDX89288.1	SEG:seg	SUPFAM:SSF50182
UniParc:UPI0004EF3BA0	MapMan:35.2	:	:	:	:

Description

BnaA01g16050D

Coordinates

chrLK031858:+:727715..730566

Molecular Weight (calculated)

50156.7 Da

IEP (calculated)

8.576

GRAVY (calculated)

-0.299

Length

466 amino acids

Sequence
(BLAST)

001: MGFERKLEDD NSTLLIATMC IIGSQVHVHV KDGSVFSGLF YTASVDNGFG IVLKNAKITK KGKSKANVAS GTVVETLVIT SSNIVQIVAE GVSLPSNVTG
101: NYEVANVGSA TETLPSEPRF SAANKSKNNC FEGRRNHHIR RAGAKILNSS ERVPDVRQLD NVDIQSSSSS LDSMSERVKP IEEDKLVMEP LSNGCHDAAE
201: RPSSTDNSSS QSTAVDETLG LWQGLEAPPN EPAPIQAVKK AKEFKLNPEA KTFSPSYTKR LSPAPTAMPD VGNVAYIPNN TPMLHVPEAV YPNLGNNPYM
301: PQTSLSSKFV PYGNLTAGNA VGVPFPQHMI GPTVNRAQPQ TFTSPYQSVQ ASPMFVNPNP QVMVARSGQF VFAQPLSQNL VQGTPPLPPP MFSRPLPPAQ
401: HVQYLKHQGV VASGQPLQLC VSQPFMTAGL QPYSVPAQFP VMQPPFPTNQ PMPVAVPNGF FGTFHK

Best Arabidopsis Sequence Match ( AT4G26990.1 )
(BLAST)

001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP

Arabidopsis Description

AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.