Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0741900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | Os02t0741900-01 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 55.31 | 56.43 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 50.66 | 54.01 |
| Zm00001d002243_P004 | Maize | mitochondrion | 52.88 | 52.64 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 52.88 | 52.41 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 50.22 | 51.59 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 48.45 | 49.89 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 11.73 | 39.26 |
| KRH46148 | Soybean | plastid | 15.93 | 33.64 |
| KRG98802 | Soybean | nucleus | 32.96 | 30.1 |
| KRH46146 | Soybean | nucleus, plastid | 17.04 | 26.83 |
| CDX92788 | Canola | plastid | 9.73 | 26.67 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 33.63 | 26.43 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 27.21 | 24.31 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 26.99 | 24.06 |
| CDY46672 | Canola | nucleus | 22.79 | 23.36 |
| Bra026388.1-P | Field mustard | nucleus | 23.89 | 23.08 |
| CDY29262 | Canola | nucleus | 23.67 | 22.91 |
| CDX89288 | Canola | nucleus | 23.45 | 22.75 |
| AT4G26990.1 | Thale cress | plasma membrane | 23.67 | 22.57 |
| AT5G54920.2 | Thale cress | plastid | 24.56 | 21.26 |
| Os02t0480900-01 | Rice | nucleus | 16.59 | 12.69 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4337065 | UniProt:A0A0P0WEY9 | InterPro:Ataxin-2_C | ProteinID:BAS91115.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0010494 | GO:GO:0010603 | GO:GO:0016043 |
| GO:GO:0034063 | EnsemblPlantsGene:Os04g0625900 | EnsemblPlants:Os04t0625900-01 | PFAM:PF07145 | PFAM:PF14438 | PANTHER:PTHR12854 |
| PANTHER:PTHR12854:SF12 | InterPro:SM_dom_ATX | UniParc:UPI00039390A9 | RefSeq:XP_015633826.1 | SEG:seg | : |
Description
Similar to OSIGBa0148A10.9 protein. (Os04t0625900-01)
Coordinates
chr4:+:31824102..31828850
Molecular Weight (calculated)
47032.5 Da
IEP (calculated)
9.948
GRAVY (calculated)
-0.058
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPKRTKPP PPSRKAETAA AAAQRPSSSS SSPSPSLPEA LLLATVCMVG LPVEVQVRDG SAYAGVLHTA SVEGGYGVVL KKARKIANGN DNANIPLGAF
101: VDSLVIHPDD LVQVIAKDFS LHTKDVCRTP VCDTVAASAY VKPQTSHVNV FPLKEVKKCS TPGEETNISI GRSSPASPTG YVGPRLSCNE IMSSAVVGSK
201: DGNTKSAVLT TPTMSSDVKI SPPATVAKTA TPSKTIAKES KLNPCARVFS PSFASSRPVL AAAPSVNPIY ISNSVAGVPT GLPVFETNSV PGGSSLSSKA
301: VHYNNLAAAN YAISPQYTQS TMGHNVSRLD PARIGTPYHP MQVGPAYISP SPQPVTGGKF NHVVYVHPFS QDVMHGAPVM PQGWSLPAPL NSHQASLQKF
401: QGTAPVYVAP PIMATGNLPL VVPSPAPLVQ PFQAVRPIMV PAASSMVPGK YM
101: VDSLVIHPDD LVQVIAKDFS LHTKDVCRTP VCDTVAASAY VKPQTSHVNV FPLKEVKKCS TPGEETNISI GRSSPASPTG YVGPRLSCNE IMSSAVVGSK
201: DGNTKSAVLT TPTMSSDVKI SPPATVAKTA TPSKTIAKES KLNPCARVFS PSFASSRPVL AAAPSVNPIY ISNSVAGVPT GLPVFETNSV PGGSSLSSKA
301: VHYNNLAAAN YAISPQYTQS TMGHNVSRLD PARIGTPYHP MQVGPAYISP SPQPVTGGKF NHVVYVHPFS QDVMHGAPVM PQGWSLPAPL NSHQASLQKF
401: QGTAPVYVAP PIMATGNLPL VVPSPAPLVQ PFQAVRPIMV PAASSMVPGK YM
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.